Variant report

Variant	rs7801068
Chromosome Location	chr7:26411939-26411940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26411714..26413787-chr7:26415073..26417002,2	MCF-7	breast:
2	chr7:26409931..26411441-chr7:26411938..26414245,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA0087-2	chr7:26411764-26412188	ENSG00000225792.1

Variant related genes	Relation type
ENSG00000225792	Chromatin interaction
ENSG00000086300	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17153630	1.00[EUR][1000 genomes]
rs17153639	1.00[EUR][1000 genomes]
rs17153646	1.00[EUR][1000 genomes]
rs57271652	1.00[EUR][1000 genomes]
rs57468306	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58435943	1.00[EUR][1000 genomes]
rs6946110	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73285295	1.00[EUR][1000 genomes]
rs73683300	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7800956	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26375000-26414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:26385600-26414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:26389000-26413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:26398600-26415400	Weak transcription	HMEC	breast
5	chr7:26402600-26415200	Enhancers	Liver	Liver
6	chr7:26403800-26415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:26404800-26414000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:26404800-26415200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:26405200-26413800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:26405200-26414000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:26405400-26413800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:26405400-26414600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:26405800-26414600	Weak transcription	K562	blood
14	chr7:26407400-26412000	Weak transcription	Placenta	Placenta
15	chr7:26407400-26415400	Weak transcription	HepG2	liver
16	chr7:26407400-26415600	Weak transcription	Spleen	Spleen
17	chr7:26407600-26413800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:26407600-26415400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr7:26409600-26413800	Weak transcription	Fetal Brain Male	brain
20	chr7:26409800-26412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:26409800-26413600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:26409800-26415400	Weak transcription	GM12878-XiMat	blood
23	chr7:26410000-26413000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr7:26410200-26412200	Weak transcription	Fetal Intestine Large	intestine
25	chr7:26410200-26412200	Enhancers	HUVEC	blood vessel
26	chr7:26410200-26412400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:26410200-26413200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr7:26410200-26413400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr7:26410200-26413800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:26410200-26414800	Weak transcription	Primary T cells from cord blood	blood
31	chr7:26410200-26414800	Weak transcription	Fetal Thymus	thymus
32	chr7:26410200-26415200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:26410200-26415400	Weak transcription	Adipose Nuclei	Adipose
34	chr7:26410400-26413200	Strong transcription	Primary B cells from cord blood	blood
35	chr7:26410600-26414600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:26410800-26412000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:26411000-26414400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr7:26411200-26413400	Enhancers	Primary hematopoietic stem cells	blood
39	chr7:26411200-26414200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:26411200-26414800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:26411400-26412400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr7:26411800-26412000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:26411800-26412400	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:26411800-26412400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links