Variant report

Variant	rs6948560
Chromosome Location	chr7:138353296-138353297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28503872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58568101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59419813	1.00[AMR][1000 genomes]
rs6956401	1.00[AMR][1000 genomes]
rs6956608	1.00[AMR][1000 genomes]
rs6976485	1.00[AMR][1000 genomes]
rs73729604	1.00[AMR][1000 genomes]
rs73730411	1.00[AMR][1000 genomes]
rs73730416	1.00[AMR][1000 genomes]
rs73730418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730423	1.00[AMR][1000 genomes]
rs73730424	1.00[AMR][1000 genomes]
rs73730425	1.00[AMR][1000 genomes]
rs73730427	1.00[AMR][1000 genomes]
rs7780581	1.00[AMR][1000 genomes]
rs7790139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138349800-138355000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:138350200-138353600	Weak transcription	Colonic Mucosa	Colon
3	chr7:138350200-138354800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:138350400-138354000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:138351000-138353800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr7:138351000-138354600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:138351800-138358200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:138351800-138369200	Weak transcription	Hela-S3	cervix
9	chr7:138352200-138353800	Weak transcription	Fetal Intestine Large	intestine
10	chr7:138352600-138353400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:138352600-138354000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:138352600-138354400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:138352800-138354000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:138352800-138354000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:138352800-138355400	Enhancers	Placenta	Placenta
16	chr7:138353200-138353400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr7:138353200-138354800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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