Variant report

Variant	rs6956401
Chromosome Location	chr7:138359635-138359636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28503872	1.00[AMR][1000 genomes]
rs58568101	1.00[AMR][1000 genomes]
rs59419813	1.00[AMR][1000 genomes]
rs6948560	1.00[AMR][1000 genomes]
rs6956608	1.00[AMR][1000 genomes]
rs6976485	1.00[AMR][1000 genomes]
rs73729604	1.00[AMR][1000 genomes]
rs73730411	1.00[AMR][1000 genomes]
rs73730416	1.00[AMR][1000 genomes]
rs73730418	1.00[AMR][1000 genomes]
rs73730423	1.00[AMR][1000 genomes]
rs73730424	1.00[AMR][1000 genomes]
rs73730425	1.00[AMR][1000 genomes]
rs73730427	1.00[AMR][1000 genomes]
rs7780581	1.00[AMR][1000 genomes]
rs7790139	1.00[AMR][1000 genomes]
rs7807984	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138351800-138369200	Weak transcription	Hela-S3	cervix
2	chr7:138354000-138362600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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