Variant report
| Variant | rs6948653 |
|---|---|
| Chromosome Location | chr7:124152266-124152267 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:124150018..124152353-chr7:124155127..124157377,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10435284 | 0.92[ASN][1000 genomes] |
| rs10808216 | 0.92[ASN][1000 genomes] |
| rs10954028 | 0.92[ASN][1000 genomes] |
| rs1120715 | 0.92[ASN][1000 genomes] |
| rs11769930 | 0.92[ASN][1000 genomes] |
| rs11975650 | 0.92[ASN][1000 genomes] |
| rs12154458 | 0.92[ASN][1000 genomes] |
| rs12537567 | 0.92[ASN][1000 genomes] |
| rs12539477 | 0.92[ASN][1000 genomes] |
| rs12672613 | 0.92[ASN][1000 genomes] |
| rs12673678 | 0.92[ASN][1000 genomes] |
| rs12674451 | 0.92[ASN][1000 genomes] |
| rs1990255 | 0.92[ASN][1000 genomes] |
| rs2190916 | 0.92[ASN][1000 genomes] |
| rs2190925 | 0.92[ASN][1000 genomes] |
| rs2215155 | 0.92[ASN][1000 genomes] |
| rs2402729 | 0.92[ASN][1000 genomes] |
| rs35442377 | 0.84[ASN][1000 genomes] |
| rs35665276 | 0.92[ASN][1000 genomes] |
| rs3993638 | 0.92[ASN][1000 genomes] |
| rs4728000 | 0.92[ASN][1000 genomes] |
| rs4731183 | 0.92[ASN][1000 genomes] |
| rs56980849 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6466929 | 0.92[ASN][1000 genomes] |
| rs6466932 | 0.92[ASN][1000 genomes] |
| rs6948215 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6949023 | 0.92[ASN][1000 genomes] |
| rs6953126 | 0.92[ASN][1000 genomes] |
| rs7800384 | 0.92[ASN][1000 genomes] |
| rs929451 | 0.92[ASN][1000 genomes] |
| rs929452 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1795113 | chr7:123885477-124188665 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
| 3 | esv1808414 | chr7:123957376-124188665 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv525687 | chr7:124138187-124196444 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv608340 | chr7:124138187-124196444 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:124149800-124153800 | Weak transcription | Fetal Lung | lung |
