Variant report

Variant	rs35442377
Chromosome Location	chr7:124098210-124098211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10435284	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10808216	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10954028	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1120715	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11769930	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11975650	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12154458	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12537567	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12539477	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12672613	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12673678	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12674451	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1990255	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2190916	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2190925	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2215155	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2402729	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35665276	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35737707	1.00[AFR][1000 genomes]
rs3993638	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4728000	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731183	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56980849	0.84[ASN][1000 genomes]
rs6466929	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466932	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6948215	0.84[ASN][1000 genomes]
rs6948653	0.84[ASN][1000 genomes]
rs6949023	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6953126	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7800384	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs929451	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs929452	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795113	chr7:123885477-124188665	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	esv1808414	chr7:123957376-124188665	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124092400-124099400	Weak transcription	Fetal Kidney	kidney
2	chr7:124095800-124100000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:124096600-124099400	Weak transcription	Fetal Stomach	stomach
4	chr7:124097400-124101400	Enhancers	NHLF	lung
5	chr7:124097600-124099800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:124097800-124098400	Enhancers	HMEC	breast
7	chr7:124098000-124098800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:124098200-124098600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:124098200-124099200	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links