Variant report

Variant	rs6949201
Chromosome Location	chr7:116388866-116388867
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12533223	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540703	0.96[ASN][1000 genomes]
rs17138978	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17138983	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237716	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807996	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58086374	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61248776	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73471107	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73471137	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779694	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024485	chr7:116375336-116391582	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1018515	chr7:116380755-116391582	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv274927	chr7:116382918-116395518	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:116357400-116409800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116375000-116418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:116375800-116411200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:116377800-116395600	Weak transcription	NH-A	brain
6	chr7:116378000-116389000	Weak transcription	Stomach Mucosa	stomach
7	chr7:116378800-116422200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:116381200-116392200	Weak transcription	HUVEC	blood vessel
9	chr7:116381400-116413400	Weak transcription	NHLF	lung
10	chr7:116381600-116398600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:116381600-116418600	Weak transcription	Aorta	Aorta
12	chr7:116381800-116407000	Weak transcription	Pancreas	Pancrea
13	chr7:116382000-116398000	Weak transcription	Hela-S3	cervix
14	chr7:116382000-116413400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:116382200-116409800	Weak transcription	Placenta	Placenta
16	chr7:116382400-116396400	Weak transcription	HMEC	breast
17	chr7:116383000-116392400	Weak transcription	Left Ventricle	heart
18	chr7:116383000-116396800	Weak transcription	Psoas Muscle	Psoas
19	chr7:116383600-116397400	Weak transcription	HSMM	muscle
20	chr7:116383800-116399400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr7:116383800-116409400	Weak transcription	Fetal Kidney	kidney
22	chr7:116384000-116391800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:116384000-116392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:116384000-116397400	Weak transcription	NHEK	skin
25	chr7:116384000-116405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:116384000-116406200	Weak transcription	HepG2	liver
27	chr7:116384200-116395400	Weak transcription	Osteobl	bone
28	chr7:116384200-116395800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:116384200-116411200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:116384400-116391600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:116384600-116394000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:116384800-116392200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:116385000-116394200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:116388000-116394000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:116388400-116389400	Weak transcription	Fetal Intestine Small	intestine
36	chr7:116388400-116391800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:116388400-116416200	Weak transcription	Fetal Stomach	stomach
38	chr7:116388600-116391600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links