Variant report

Variant	rs17138983
Chromosome Location	chr7:116402733-116402734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116397070..116399256-chr7:116401066..116403649,2	K562	blood:

Variant related genes	Relation type
ENSG00000105976	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12533223	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540703	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16870030	0.82[JPT][hapmap]
rs17138978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17138980	1.00[TSI][hapmap]
rs17139063	0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17139068	0.82[JPT][hapmap]
rs17139140	1.00[TSI][hapmap]
rs2237716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807996	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38858	0.90[YRI][hapmap]
rs58086374	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61248776	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949201	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978257	1.00[TSI][hapmap]
rs73471107	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73471137	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779694	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:116357400-116409800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116375000-116418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:116375800-116411200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:116378800-116422200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:116381400-116413400	Weak transcription	NHLF	lung
7	chr7:116381600-116418600	Weak transcription	Aorta	Aorta
8	chr7:116381800-116407000	Weak transcription	Pancreas	Pancrea
9	chr7:116382000-116413400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:116382200-116409800	Weak transcription	Placenta	Placenta
11	chr7:116383800-116409400	Weak transcription	Fetal Kidney	kidney
12	chr7:116384000-116405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:116384000-116406200	Weak transcription	HepG2	liver
14	chr7:116384200-116411200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:116388400-116416200	Weak transcription	Fetal Stomach	stomach
16	chr7:116391600-116405400	Strong transcription	A549	lung
17	chr7:116391600-116410600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:116392600-116405400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:116392800-116411600	Weak transcription	NHDF-Ad	bronchial
20	chr7:116393000-116403600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:116393000-116405400	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:116393000-116419000	Weak transcription	Left Ventricle	heart
23	chr7:116393200-116410600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:116393400-116409600	Weak transcription	HSMMtube	muscle
25	chr7:116394000-116411000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:116394000-116415600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:116394200-116410800	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr7:116394800-116405600	Weak transcription	Fetal Intestine Small	intestine
29	chr7:116394800-116407000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:116395600-116411800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:116395800-116406600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:116399600-116403200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:116399800-116410000	Weak transcription	Hela-S3	cervix
34	chr7:116400000-116406600	Weak transcription	Small Intestine	intestine
35	chr7:116400000-116407000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:116400000-116409800	Weak transcription	NH-A	brain
37	chr7:116400200-116402800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:116400200-116408800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:116400400-116403000	Weak transcription	Liver	Liver
40	chr7:116400400-116403000	Weak transcription	HUVEC	blood vessel
41	chr7:116400400-116407000	Weak transcription	Psoas Muscle	Psoas
42	chr7:116401000-116412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:116401800-116409800	Strong transcription	Osteobl	bone
44	chr7:116401800-116410600	Strong transcription	NHEK	skin
45	chr7:116402000-116404000	Enhancers	Fetal Lung	lung
46	chr7:116402200-116403200	Weak transcription	Brain Anterior Caudate	brain
47	chr7:116402400-116403600	Enhancers	Brain Substantia Nigra	brain
48	chr7:116402400-116407600	Strong transcription	HMEC	breast
49	chr7:116402600-116402800	Weak transcription	HSMM	muscle
50	chr7:116402600-116403400	Enhancers	Brain Cingulate Gyrus	brain

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