Variant report

Variant	rs17138980
Chromosome Location	chr7:116401669-116401670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116394347..116396793-chr7:116399682..116402308,2	K562	blood:
2	chr7:116391329..116393101-chr7:116400609..116402352,2	K562	blood:
3	chr7:116397070..116399256-chr7:116401066..116403649,2	K562	blood:

Variant related genes	Relation type
ENSG00000105976	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17138978	1.00[TSI][hapmap]
rs17138983	1.00[TSI][hapmap]
rs17139063	0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs17139068	0.82[YRI][hapmap]
rs17139140	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17139143	1.00[CEU][hapmap]
rs6969068	1.00[EUR][1000 genomes]
rs6978257	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73469197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471113	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471168	1.00[EUR][1000 genomes]
rs73471192	1.00[EUR][1000 genomes]
rs73471198	1.00[EUR][1000 genomes]
rs73473203	1.00[EUR][1000 genomes]
rs73473209	1.00[EUR][1000 genomes]
rs73473215	1.00[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:116357400-116409800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116375000-116418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:116375800-116411200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:116378800-116422200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:116381400-116413400	Weak transcription	NHLF	lung
7	chr7:116381600-116418600	Weak transcription	Aorta	Aorta
8	chr7:116381800-116407000	Weak transcription	Pancreas	Pancrea
9	chr7:116382000-116413400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:116382200-116409800	Weak transcription	Placenta	Placenta
11	chr7:116383800-116409400	Weak transcription	Fetal Kidney	kidney
12	chr7:116384000-116405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:116384000-116406200	Weak transcription	HepG2	liver
14	chr7:116384200-116411200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:116388400-116416200	Weak transcription	Fetal Stomach	stomach
16	chr7:116391600-116405400	Strong transcription	A549	lung
17	chr7:116391600-116410600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:116392600-116405400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:116392800-116411600	Weak transcription	NHDF-Ad	bronchial
20	chr7:116393000-116403600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:116393000-116405400	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:116393000-116419000	Weak transcription	Left Ventricle	heart
23	chr7:116393200-116410600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:116393400-116409600	Weak transcription	HSMMtube	muscle
25	chr7:116394000-116411000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:116394000-116415600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:116394200-116410800	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr7:116394800-116405600	Weak transcription	Fetal Intestine Small	intestine
29	chr7:116394800-116407000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:116395600-116411800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:116395800-116406600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:116397400-116401800	Strong transcription	HSMM	muscle
33	chr7:116397800-116402000	Weak transcription	Fetal Lung	lung
34	chr7:116399600-116403200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:116399800-116410000	Weak transcription	Hela-S3	cervix
36	chr7:116400000-116406600	Weak transcription	Small Intestine	intestine
37	chr7:116400000-116407000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:116400000-116409800	Weak transcription	NH-A	brain
39	chr7:116400200-116402800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:116400200-116408800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:116400400-116402600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:116400400-116403000	Weak transcription	Liver	Liver
43	chr7:116400400-116403000	Weak transcription	HUVEC	blood vessel
44	chr7:116400400-116407000	Weak transcription	Psoas Muscle	Psoas
45	chr7:116401000-116401800	Weak transcription	Osteobl	bone
46	chr7:116401000-116402400	Weak transcription	HMEC	breast
47	chr7:116401000-116402600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:116401000-116412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:116401200-116401800	Weak transcription	NHEK	skin

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