Variant report

Variant	rs73469197
Chromosome Location	chr7:116378553-116378554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116377829..116379958-chr7:116381598..116383954,2	MCF-7	breast:
2	chr7:116367638..116371989-chr7:116374128..116379673,5	K562	blood:
3	chr7:116368864..116371989-chr7:116376223..116379673,4	K562	blood:
4	chr7:116370658..116372962-chr7:116376883..116379609,4	MCF-7	breast:
5	chr7:116363196..116365443-chr7:116378264..116380063,2	MCF-7	breast:
6	chr7:116378415..116380410-chr7:116408724..116411435,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105976	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17138980	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17139140	1.00[EUR][1000 genomes]
rs6969068	1.00[EUR][1000 genomes]
rs6978257	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471109	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471113	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471168	1.00[EUR][1000 genomes]
rs73471192	1.00[EUR][1000 genomes]
rs73471198	1.00[EUR][1000 genomes]
rs73473203	1.00[EUR][1000 genomes]
rs73473209	1.00[EUR][1000 genomes]
rs73473215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024485	chr7:116375336-116391582	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:116357400-116409800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116366600-116380800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:116367000-116380800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:116367800-116381200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:116368000-116381200	Weak transcription	Placenta	Placenta
7	chr7:116368200-116380800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:116370000-116379000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:116371400-116380200	Weak transcription	Hela-S3	cervix
10	chr7:116371600-116379200	Genic enhancers	A549	lung
11	chr7:116371800-116382800	Weak transcription	Left Ventricle	heart
12	chr7:116375000-116418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:116375400-116379000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:116375400-116380800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:116375400-116381200	Weak transcription	Pancreas	Pancrea
16	chr7:116375600-116378600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:116375600-116379400	Weak transcription	Fetal Stomach	stomach
18	chr7:116375600-116381400	Weak transcription	Brain Substantia Nigra	brain
19	chr7:116375800-116380000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:116375800-116411200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:116376000-116378600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:116376000-116380800	Weak transcription	Gastric	stomach
23	chr7:116376200-116381000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr7:116376600-116378600	Enhancers	Osteobl	bone
25	chr7:116376600-116379000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr7:116376600-116379200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr7:116376600-116379200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr7:116376600-116379200	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr7:116376600-116379200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr7:116376600-116379200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr7:116376600-116379200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr7:116376600-116380000	Enhancers	HepG2	liver
33	chr7:116376800-116378600	Enhancers	Adipose Nuclei	Adipose
34	chr7:116377000-116379800	Weak transcription	NHEK	skin
35	chr7:116377200-116379600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:116377400-116380000	Weak transcription	HSMM	muscle
37	chr7:116377400-116381400	Enhancers	Liver	Liver
38	chr7:116377400-116382800	Weak transcription	Psoas Muscle	Psoas
39	chr7:116377600-116378600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:116377600-116379200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr7:116377600-116379400	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:116377600-116380000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:116377600-116380600	Weak transcription	HSMMtube	muscle
44	chr7:116377600-116381400	Weak transcription	Aorta	Aorta
45	chr7:116377800-116379000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:116377800-116379000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr7:116377800-116379200	Enhancers	Fetal Lung	lung
48	chr7:116377800-116380000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr7:116377800-116380800	Weak transcription	Fetal Intestine Small	intestine
50	chr7:116377800-116380800	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links