Variant report

Variant	rs73471168
Chromosome Location	chr7:116482863-116482864
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17138980	1.00[EUR][1000 genomes]
rs17139140	1.00[EUR][1000 genomes]
rs6969068	1.00[EUR][1000 genomes]
rs6978257	1.00[EUR][1000 genomes]
rs73469197	1.00[EUR][1000 genomes]
rs73471109	1.00[EUR][1000 genomes]
rs73471113	1.00[EUR][1000 genomes]
rs73471192	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471198	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73473203	1.00[EUR][1000 genomes]
rs73473209	1.00[EUR][1000 genomes]
rs73473215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116472000-116483400	Weak transcription	Right Atrium	heart
2	chr7:116480400-116483400	Weak transcription	Pancreas	Pancrea
3	chr7:116480600-116485600	Weak transcription	Liver	Liver
4	chr7:116481600-116483600	Enhancers	Primary B cells from peripheral blood	blood
5	chr7:116481800-116484000	Enhancers	Primary B cells from cord blood	blood
6	chr7:116482200-116483000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:116482200-116483000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:116482200-116483400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:116482600-116483200	Enhancers	Primary hematopoietic stem cells	blood
10	chr7:116482600-116484400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:116482800-116483000	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr7:116482800-116484400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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