Variant report

Variant	rs73471198
Chromosome Location	chr7:116499411-116499412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:116499318-116499778	MCF10A-Er-Src	breast:	n/a	n/a
2	SRF	chr7:116499362-116499854	ECC-1	luminal epithelium:	n/a	chr7:116499584-116499595 chr7:116499585-116499596 chr7:116499581-116499599 chr7:116499586-116499597 chr7:116499586-116499595 chr7:116499583-116499598 chr7:116499581-116499595 chr7:116499584-116499597 chr7:116499582-116499599 chr7:116499579-116499596
3	STAT3	chr7:116499271-116499767	MCF10A-Er-Src	breast:	n/a	n/a
4	MYC	chr7:116499352-116499750	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr7:116499325-116499791	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr7:116499367-116499769	Hela-S3	cervix:	n/a	chr7:116499572-116499583 chr7:116499570-116499581
7	CEBPB	chr7:116499398-116499732	HepG2	liver:	n/a	chr7:116499572-116499583 chr7:116499570-116499581
8	MXI1	chr7:116499372-116499700	Hela-S3	cervix:	n/a	n/a
9	MYC	chr7:116499348-116499750	MCF10A-Er-Src	breast:	n/a	n/a
10	SRF	chr7:116499361-116499875	HCT-116	colon:	n/a	chr7:116499584-116499595 chr7:116499585-116499596 chr7:116499581-116499599 chr7:116499586-116499597 chr7:116499586-116499595 chr7:116499583-116499598 chr7:116499581-116499595 chr7:116499584-116499597 chr7:116499582-116499599 chr7:116499579-116499596
11	E2F4	chr7:116499282-116499722	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr7:116499361-116499755	A549	lung:	n/a	chr7:116499572-116499583 chr7:116499570-116499581
13	CEBPB	chr7:116499359-116499787	IMR90	lung:	n/a	chr7:116499572-116499583 chr7:116499570-116499581
14	STAT3	chr7:116499343-116499726	MCF10A-Er-Src	breast:	n/a	n/a
15	FOS	chr7:116499326-116499829	MCF10A-Er-Src	breast:	n/a	n/a
16	MXI1	chr7:116499399-116499658	K562	blood:	n/a	n/a
17	ARID3A	chr7:116499402-116499711	HepG2	liver:	n/a	n/a
18	FOS	chr7:116499326-116499803	MCF10A-Er-Src	breast:	n/a	n/a
19	EP300	chr7:116499389-116499750	Hela-S3	cervix:	n/a	chr7:116499571-116499585 chr7:116499687-116499697 chr7:116499705-116499719 chr7:116499422-116499431 chr7:116499693-116499707
20	STAT3	chr7:116499288-116499752	MCF10A-Er-Src	breast:	n/a	n/a
21	CEBPB	chr7:116499375-116499755	K562	blood:	n/a	chr7:116499572-116499583 chr7:116499570-116499581
22	POLR2A	chr7:116499297-116499930	MCF10A-Er-Src	breast:	n/a	n/a
23	CEBPB	chr7:116499338-116499772	K562	blood:	n/a	chr7:116499572-116499583 chr7:116499570-116499581
24	STAT3	chr7:116499289-116499754	MCF10A-Er-Src	breast:	n/a	n/a
25	FOS	chr7:116499325-116499750	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	7:115861595-115870968..7:116497593-116500954	GM12878	blood:
2	chr7:116492181..116495996-chr7:116498257..116500826,4	MCF-7	breast:
3	7:115890993-115892266..7:116497593-116500954	GM12878	blood:
4	7:115847372-115857098..7:116497593-116500954	GM12878	blood:

Variant related genes	Relation type
CAPZA2	TF binding region
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17138980	1.00[EUR][1000 genomes]
rs17139140	1.00[EUR][1000 genomes]
rs6969068	1.00[EUR][1000 genomes]
rs6978257	1.00[EUR][1000 genomes]
rs73469197	1.00[EUR][1000 genomes]
rs73471109	1.00[EUR][1000 genomes]
rs73471113	1.00[EUR][1000 genomes]
rs73471168	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471192	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73473203	1.00[EUR][1000 genomes]
rs73473209	1.00[EUR][1000 genomes]
rs73473215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116495600-116502600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:116495800-116502000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:116495800-116502000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:116496400-116502200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:116497200-116502000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:116497400-116502200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:116497800-116502000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:116497800-116502000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:116497800-116502000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:116497800-116502200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:116497800-116502600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:116498400-116502200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:116499000-116500000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:116499000-116500600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr7:116499000-116500800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:116499000-116500800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:116499200-116499800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:116499200-116499800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:116499200-116499800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr7:116499200-116499800	Enhancers	NH-A	brain
21	chr7:116499200-116499800	Enhancers	NHLF	lung
22	chr7:116499200-116499800	Enhancers	Osteobl	bone
23	chr7:116499200-116500000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:116499200-116500000	Enhancers	Primary hematopoietic stem cells	blood
25	chr7:116499200-116500000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr7:116499200-116500000	Enhancers	NHDF-Ad	bronchial
27	chr7:116499200-116500000	Enhancers	NHEK	skin
28	chr7:116499200-116500600	Enhancers	Hela-S3	cervix
29	chr7:116499400-116499600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr7:116499400-116500800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links