Variant report

Variant	rs73471192
Chromosome Location	chr7:116494811-116494812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17138980	1.00[EUR][1000 genomes]
rs17139140	1.00[EUR][1000 genomes]
rs6969068	1.00[EUR][1000 genomes]
rs6978257	1.00[EUR][1000 genomes]
rs73469197	1.00[EUR][1000 genomes]
rs73471109	1.00[EUR][1000 genomes]
rs73471113	1.00[EUR][1000 genomes]
rs73471168	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471198	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73473203	1.00[EUR][1000 genomes]
rs73473209	1.00[EUR][1000 genomes]
rs73473215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116494400-116496400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:116494600-116495200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:116494600-116495600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:116494600-116495800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:116494600-116496000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:116494800-116495400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr7:116494800-116495600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:116494800-116495600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:116494800-116495800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:116494800-116495800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:116494800-116495800	Enhancers	Osteobl	bone
12	chr7:116494800-116497800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:116494800-116497800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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