Variant report

Variant	rs6978257
Chromosome Location	chr7:116411778-116411779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116411338..116414337-chr7:116414507..116416742,3	K562	blood:
2	7:115861595-115870968..7:116404429-116414428	Hela-S3	cervix:
3	7:115847372-115857098..7:116404429-116414428	Hela-S3	cervix:
4	7:115890993-115892266..7:116404429-116414428	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17138978	1.00[TSI][hapmap]
rs17138980	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17138983	1.00[TSI][hapmap]
rs17139063	0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs17139068	0.82[YRI][hapmap]
rs17139140	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17139143	1.00[CEU][hapmap]
rs6969068	1.00[EUR][1000 genomes]
rs73469197	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471109	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471113	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73471168	1.00[EUR][1000 genomes]
rs73471192	1.00[EUR][1000 genomes]
rs73471198	1.00[EUR][1000 genomes]
rs73473203	1.00[EUR][1000 genomes]
rs73473209	1.00[EUR][1000 genomes]
rs73473215	1.00[EUR][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116375000-116418400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:116378800-116422200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:116381400-116413400	Weak transcription	NHLF	lung
4	chr7:116381600-116418600	Weak transcription	Aorta	Aorta
5	chr7:116382000-116413400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:116388400-116416200	Weak transcription	Fetal Stomach	stomach
7	chr7:116393000-116419000	Weak transcription	Left Ventricle	heart
8	chr7:116394000-116415600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:116395600-116411800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:116401000-116412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:116403600-116416400	Weak transcription	Brain Substantia Nigra	brain
12	chr7:116404000-116415800	Weak transcription	Fetal Lung	lung
13	chr7:116404000-116420400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:116406400-116421000	Weak transcription	Lung	lung
15	chr7:116407200-116413200	Weak transcription	Small Intestine	intestine
16	chr7:116407200-116419400	Weak transcription	Gastric	stomach
17	chr7:116407400-116411800	Strong transcription	HSMM	muscle
18	chr7:116407400-116412800	Weak transcription	Stomach Mucosa	stomach
19	chr7:116407400-116413200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:116407400-116413200	Weak transcription	Pancreas	Pancrea
21	chr7:116407400-116415000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:116408600-116419000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:116409400-116411800	Genic enhancers	A549	lung
24	chr7:116409400-116416200	Genic enhancers	HUVEC	blood vessel
25	chr7:116410000-116412200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:116410000-116422200	Weak transcription	Adipose Nuclei	Adipose
27	chr7:116410200-116413200	Weak transcription	Fetal Muscle Leg	muscle
28	chr7:116410200-116416600	Weak transcription	HSMMtube	muscle
29	chr7:116410200-116420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:116410400-116415800	Weak transcription	Fetal Kidney	kidney
31	chr7:116410600-116412200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:116410600-116416400	Genic enhancers	NHEK	skin
33	chr7:116410800-116413600	Genic enhancers	Muscle Satellite Cultured Cells	--
34	chr7:116411000-116411800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:116411000-116411800	Weak transcription	Liver	Liver
36	chr7:116411000-116411800	Enhancers	Fetal Intestine Large	intestine
37	chr7:116411000-116411800	Enhancers	Fetal Intestine Small	intestine
38	chr7:116411000-116412200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:116411000-116412800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:116411000-116416200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:116411000-116418000	Weak transcription	Placenta	Placenta
42	chr7:116411200-116412400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:116411200-116412400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr7:116411200-116413600	Genic enhancers	NH-A	brain
45	chr7:116411200-116413800	Genic enhancers	HMEC	breast
46	chr7:116411200-116414000	Enhancers	HepG2	liver
47	chr7:116411200-116414000	Genic enhancers	Osteobl	bone
48	chr7:116411400-116412600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:116411400-116413800	Genic enhancers	Hela-S3	cervix
50	chr7:116411400-116418200	Weak transcription	Psoas Muscle	Psoas

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