Variant report

Variant	rs38858
Chromosome Location	chr7:116370287-116370288
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116309582..116311428-chr7:116367770..116371575,3	K562	blood:
2	chr7:116368864..116371989-chr7:116376223..116379673,4	K562	blood:
3	chr7:116367638..116371989-chr7:116374128..116379673,5	K562	blood:
4	7:115890993-115892266..7:116369860-116372113	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17138978	0.90[YRI][hapmap]
rs17138983	0.90[YRI][hapmap]
rs2237716	0.90[YRI][hapmap]
rs3807996	0.90[YRI][hapmap]
rs38851	0.85[CEU][hapmap]
rs38852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs38854	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs38855	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs39748	0.82[CEU][hapmap]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:116357400-116371200	Weak transcription	Fetal Stomach	stomach
3	chr7:116357400-116409800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:116357600-116376600	Weak transcription	NH-A	brain
5	chr7:116365000-116373000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:116365200-116375000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:116365200-116376600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:116366400-116370600	Enhancers	Liver	Liver
9	chr7:116366600-116380800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:116366800-116376600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:116367000-116380800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:116367200-116370800	Weak transcription	HSMMtube	muscle
13	chr7:116367400-116371600	Weak transcription	Brain Anterior Caudate	brain
14	chr7:116367600-116370400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:116367600-116371600	Weak transcription	HSMM	muscle
16	chr7:116367800-116371000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:116367800-116371200	Weak transcription	Brain Substantia Nigra	brain
18	chr7:116367800-116371600	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:116367800-116371800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:116367800-116373000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:116367800-116381200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:116368000-116371600	Weak transcription	HUVEC	blood vessel
23	chr7:116368000-116372600	Weak transcription	Brain Angular Gyrus	brain
24	chr7:116368000-116381200	Weak transcription	Placenta	Placenta
25	chr7:116368200-116370400	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:116368200-116370600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:116368200-116370600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:116368200-116374800	Weak transcription	Pancreas	Pancrea
29	chr7:116368200-116377000	Weak transcription	NHDF-Ad	bronchial
30	chr7:116368200-116380800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:116368400-116376000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:116368600-116371200	Weak transcription	Osteobl	bone
33	chr7:116368600-116371400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:116368800-116370400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:116368800-116370600	Weak transcription	Fetal Intestine Small	intestine
36	chr7:116368800-116374800	Weak transcription	Gastric	stomach
37	chr7:116368800-116376800	Weak transcription	Fetal Intestine Large	intestine
38	chr7:116369000-116371800	Weak transcription	Stomach Mucosa	stomach
39	chr7:116369200-116370400	Weak transcription	Psoas Muscle	Psoas
40	chr7:116369800-116375600	Strong transcription	NHEK	skin
41	chr7:116370000-116370400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr7:116370000-116370600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:116370000-116370800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:116370000-116371600	Enhancers	Fetal Kidney	kidney
45	chr7:116370000-116379000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:116370200-116370400	Enhancers	Lung	lung
47	chr7:116370200-116370600	Weak transcription	HMEC	breast
48	chr7:116370200-116371000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:116370200-116371000	Enhancers	Fetal Lung	lung
50	chr7:116370200-116371000	Flanking Active TSS	A549	lung

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