Variant report

Variant	rs38852
Chromosome Location	chr7:116354525-116354526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116350541..116353623-chr7:116354228..116357079,5	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs38848	0.83[EUR][1000 genomes]
rs38851	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs38854	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs38855	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs39748	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs39750	0.82[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116332000-116355800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:116340200-116354600	Weak transcription	Fetal Stomach	stomach
3	chr7:116340400-116356800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:116347200-116356800	Weak transcription	Psoas Muscle	Psoas
5	chr7:116347400-116357000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:116349200-116356400	Weak transcription	HUVEC	blood vessel
7	chr7:116349200-116356600	Weak transcription	HSMMtube	muscle
8	chr7:116351000-116356600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:116351200-116356800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:116352200-116356800	Weak transcription	Gastric	stomach
12	chr7:116352400-116355200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:116352400-116355200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:116352400-116355400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:116352400-116355400	Weak transcription	Hela-S3	cervix
16	chr7:116352400-116355800	Genic enhancers	A549	lung
17	chr7:116352400-116356800	Weak transcription	Liver	Liver
18	chr7:116352400-116356800	Weak transcription	Pancreas	Pancrea
19	chr7:116352400-116356800	Weak transcription	Stomach Mucosa	stomach
20	chr7:116352600-116355600	Enhancers	Osteobl	bone
21	chr7:116353200-116366600	Weak transcription	Fetal Intestine Small	intestine
22	chr7:116353400-116354600	Enhancers	HSMM	muscle
23	chr7:116353400-116355400	Enhancers	NH-A	brain
24	chr7:116353400-116356000	Enhancers	NHLF	lung
25	chr7:116353400-116356200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:116353400-116356600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:116353400-116356600	Enhancers	NHDF-Ad	bronchial
28	chr7:116353600-116354600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:116353600-116354600	Enhancers	HMEC	breast
30	chr7:116353600-116355400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:116353600-116355400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:116353800-116355000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:116354000-116355000	Strong transcription	NHEK	skin
34	chr7:116354000-116355200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:116354000-116356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:116354000-116366200	Weak transcription	HepG2	liver
37	chr7:116354200-116354600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:116354200-116355400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:116354200-116355600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:116354400-116355400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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