Variant report

Variant	rs38855
Chromosome Location	chr7:116358044-116358045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116356281..116359013-chr7:116422388..116424380,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs35759345	0.81[TSI][hapmap]
rs38848	0.83[EUR][1000 genomes]
rs38851	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs38852	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38854	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs38858	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs39748	0.82[EUR][1000 genomes]
rs39750	0.82[EUR][1000 genomes]
rs6978135	0.81[TSI][hapmap]

Variant related diseases (count:1)

Disease	PMID	Source
Triglycerides	24097068	GWAS catalog

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116351800-116407000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:116353200-116366600	Weak transcription	Fetal Intestine Small	intestine
3	chr7:116354000-116366200	Weak transcription	HepG2	liver
4	chr7:116356800-116358200	Enhancers	Fetal Muscle Trunk	muscle
5	chr7:116357000-116358200	Enhancers	Brain Angular Gyrus	brain
6	chr7:116357000-116358400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:116357400-116358200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:116357400-116358400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:116357400-116364800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:116357400-116364800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:116357400-116364800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:116357400-116366600	Weak transcription	Pancreas	Pancrea
13	chr7:116357400-116366600	Weak transcription	Psoas Muscle	Psoas
14	chr7:116357400-116366800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:116357400-116371200	Weak transcription	Fetal Stomach	stomach
16	chr7:116357400-116409800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:116357600-116358200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:116357600-116358200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr7:116357600-116364600	Weak transcription	NHEK	skin
20	chr7:116357600-116364800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:116357600-116366400	Weak transcription	HUVEC	blood vessel
22	chr7:116357600-116366600	Weak transcription	HSMM	muscle
23	chr7:116357600-116366800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:116357600-116366800	Weak transcription	Fetal Muscle Leg	muscle
25	chr7:116357600-116370000	Weak transcription	HMEC	breast
26	chr7:116357600-116370200	Weak transcription	Hela-S3	cervix
27	chr7:116357600-116376600	Weak transcription	NH-A	brain
28	chr7:116357800-116358200	Enhancers	A549	lung
29	chr7:116357800-116364600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:116357800-116366600	Weak transcription	Osteobl	bone
31	chr7:116357800-116367000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:116357800-116367000	Weak transcription	NHDF-Ad	bronchial

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