Variant report

Variant	rs6950965
Chromosome Location	chr7:2921266-2921267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10253577	1.00[ASN][1000 genomes]
rs11766446	1.00[ASN][1000 genomes]
rs11767125	1.00[ASN][1000 genomes]
rs1476633	1.00[ASN][1000 genomes]
rs17196783	1.00[ASN][1000 genomes]
rs1859559	1.00[ASN][1000 genomes]
rs56152914	0.86[EUR][1000 genomes]
rs6950986	1.00[ASN][1000 genomes]
rs6976564	0.86[EUR][1000 genomes]
rs73035277	1.00[ASN][1000 genomes]
rs73035279	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv887315	chr7:2895627-2935424	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv526132	chr7:2904928-2968361	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv887316	chr7:2904928-2983520	Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv887317	chr7:2911972-2944187	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv971481	chr7:2913356-2925013	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv464259	chr7:2920067-2937450	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2903600-2921600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:2916400-2921600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:2918000-2923400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:2918800-2923400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:2919200-2921600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:2919200-2922400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:2919600-2923600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:2919600-2924000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:2919800-2922000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:2919800-2923600	Weak transcription	Fetal Kidney	kidney
11	chr7:2919800-2926400	Weak transcription	Fetal Brain Male	brain
12	chr7:2920000-2921600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:2920000-2921600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:2920400-2921600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:2920600-2921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:2920600-2921600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:2920600-2921800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:2920800-2926200	Weak transcription	HMEC	breast
19	chr7:2921000-2921400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:2921000-2921400	Enhancers	Fetal Thymus	thymus
21	chr7:2921000-2923800	Weak transcription	A549	lung
22	chr7:2921000-2926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:2921200-2921400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:2921200-2921400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:2921200-2921600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:2921200-2921800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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