Variant report

Variant	rs6952925
Chromosome Location	chr7:108854833-108854834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10234282	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10261517	0.80[AMR][1000 genomes]
rs1100298	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11978844	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12532619	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1811174	0.85[AMR][1000 genomes]
rs2051697	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2051698	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4727723	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60873808	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6952038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6952661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970332	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6971703	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs766707	0.85[AMR][1000 genomes]
rs7801313	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs995017	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429794	chr7:108763098-109003574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1016803	chr7:108786402-109013227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539054	chr7:108786402-109013227	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831094	chr7:108806619-108981593	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108854200-108855200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links