Variant report

Variant	rs766707
Chromosome Location	chr7:108892533-108892534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10234282	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10261517	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1100298	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11978844	0.84[ASW][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes]
rs12532619	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1811174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2051697	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2051698	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4727723	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60873808	0.86[AMR][1000 genomes]
rs6952038	0.85[AMR][1000 genomes]
rs6952661	0.85[AMR][1000 genomes]
rs6952925	0.85[AMR][1000 genomes]
rs6970332	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6971703	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7801313	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs995017	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429794	chr7:108763098-109003574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1016803	chr7:108786402-109013227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539054	chr7:108786402-109013227	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831094	chr7:108806619-108981593	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1849605	chr7:108882191-108913019	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs766707	C7orf53	cis	parietal	SCAN
rs766707	PRKAR2B	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108891600-108892800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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