Variant report

Variant	rs6953117
Chromosome Location	chr7:151000821-151000822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150998233..151001013-chr7:151008605..151011052,2	K562	blood:
2	chr7:150869179..150870329-chr7:151000054..151001183,7	K562	blood:
3	chr7:150865075..150865984-chr7:151000597..151001184,2	MCF-7	breast:
4	chr7:150578874..150579474-chr7:151000674..151001226,2	MCF-7	breast:
5	chr7:150865011..150865946-chr7:151000191..151001152,4	K562	blood:
6	chr7:150872457..150873456-chr7:151000247..151001139,5	MCF-7	breast:
7	chr7:150987600..150989961-chr7:150999462..151001040,2	MCF-7	breast:
8	chr7:150820770..150821764-chr7:151000263..151001132,6	MCF-7	breast:
9	chr7:150948685..150949333-chr7:151000281..151001196,2	MCF-7	breast:
10	chr7:150595297..150595901-chr7:151000224..151001110,2	MCF-7	breast:
11	chr7:150820448..150822484-chr7:151000193..151001183,12	K562	blood:
12	chr7:150941742..150942771-chr7:151000251..151001109,3	MCF-7	breast:
13	chr20:55683920..55684572-chr7:151000452..151001409,2	MCF-7	breast:
14	chr7:150941150..150943099-chr7:151000230..151001208,9	MCF-7	breast:
15	chr7:150820743..150821644-chr7:151000579..151001161,3	MCF-7	breast:
16	chr7:150888374..150889256-chr7:151000549..151001138,3	MCF-7	breast:
17	chr7:150822023..150822998-chr7:151000299..151001077,2	MCF-7	breast:
18	chr7:150820634..150822690-chr7:150999660..151002370,2	MCF-7	breast:
19	chr7:150869799..150870438-chr7:151000265..151000938,3	MCF-7	breast:
20	chr7:150999895..151001425-chr7:151003221..151005826,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000082014	Chromatin interaction
ENSG00000133612	Chromatin interaction

rs_ID	r²[population]
rs6964641	0.80[AMR][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150997000-151002000	Weak transcription	Gastric	stomach
2	chr7:151000200-151001200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr7:151000200-151002400	Enhancers	Fetal Brain Male	brain
4	chr7:151000400-151001000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr7:151000400-151001000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr7:151000400-151001000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:151000400-151001000	Active TSS	Brain Angular Gyrus	brain
8	chr7:151000400-151001000	Enhancers	Fetal Heart	heart
9	chr7:151000400-151001000	Genic enhancers	Right Atrium	heart
10	chr7:151000400-151001000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
11	chr7:151000400-151001000	Flanking Active TSS	HMEC	breast
12	chr7:151000400-151001200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:151000400-151001200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr7:151000400-151001200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr7:151000400-151001200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr7:151000400-151001200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:151000400-151001200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:151000400-151001200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr7:151000400-151001200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:151000400-151001200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:151000400-151001200	Active TSS	Brain Germinal Matrix	brain
22	chr7:151000400-151001200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
23	chr7:151000400-151001200	Bivalent Enhancer	Stomach Mucosa	stomach
24	chr7:151000400-151001200	Bivalent/Poised TSS	A549	lung
25	chr7:151000400-151001200	Bivalent/Poised TSS	Hela-S3	cervix
26	chr7:151000400-151001200	Bivalent/Poised TSS	HepG2	liver
27	chr7:151000400-151001400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:151000400-151001600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:151000600-151001000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:151000600-151001000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:151000600-151001000	Active TSS	Primary T cells from cord blood	blood
32	chr7:151000600-151001000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:151000600-151001000	Enhancers	Spleen	Spleen
34	chr7:151000600-151001200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
35	chr7:151000600-151001200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
36	chr7:151000600-151001200	Active TSS	Fetal Brain Female	brain
37	chr7:151000600-151001200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
39	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:151000800-151001000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:151000800-151001000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
44	chr7:151000800-151001000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:151000800-151001000	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
48	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
49	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
50	chr7:151000800-151001000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood

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