Variant report

Variant	rs6964641
Chromosome Location	chr7:151006529-151006530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:151006336..151009328-chr7:151045364..151047522,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12535753	0.83[ASN][1000 genomes]
rs2792440	0.85[ASN][1000 genomes]
rs401168	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs438906	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6953117	0.80[AMR][1000 genomes]
rs760234	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs887018	0.84[ASN][1000 genomes]
rs909210	0.87[CHB][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6964641	NUB1	cis	lymphoblastoid	seeQTL
rs6964641	GALNTL5	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151001000-151008200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:151002200-151008400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:151002600-151010600	Weak transcription	Right Atrium	heart
4	chr7:151005000-151006800	Enhancers	Fetal Lung	lung
5	chr7:151005200-151006600	Enhancers	NHLF	lung
6	chr7:151005200-151007000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:151005400-151006800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:151005400-151006800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:151005400-151007000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:151005800-151006600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:151005800-151006800	Enhancers	NHDF-Ad	bronchial
12	chr7:151006000-151006600	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:151006000-151006600	Enhancers	Placenta	Placenta
14	chr7:151006000-151006800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:151006000-151006800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:151006000-151006800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:151006000-151006800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr7:151006000-151006800	Enhancers	Osteobl	bone
19	chr7:151006000-151007000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:151006200-151006600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:151006200-151006800	Enhancers	GM12878-XiMat	blood
22	chr7:151006200-151006800	Enhancers	HMEC	breast
23	chr7:151006200-151006800	Enhancers	NH-A	brain
24	chr7:151006200-151007000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:151006200-151008400	Weak transcription	Spleen	Spleen
26	chr7:151006400-151006600	Bivalent Enhancer	Fetal Stomach	stomach
27	chr7:151006400-151006800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:151006400-151006800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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