Variant report

Variant	rs6954329
Chromosome Location	chr7:128335617-128335618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10224862	0.93[AFR][1000 genomes]
rs10242806	0.88[AFR][1000 genomes]
rs11761312	0.96[AFR][1000 genomes]
rs12535238	0.88[AFR][1000 genomes]
rs35336068	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35825132	0.90[AFR][1000 genomes]
rs57049631	1.00[AMR][1000 genomes]
rs6960296	0.80[AFR][1000 genomes]
rs6961754	0.80[AFR][1000 genomes]
rs6971819	0.80[AFR][1000 genomes]
rs6976879	0.90[AFR][1000 genomes]
rs6977126	0.90[AFR][1000 genomes]
rs71548762	0.96[AFR][1000 genomes]
rs71578283	1.00[AMR][1000 genomes]
rs7778731	0.93[AFR][1000 genomes]
rs7787154	1.00[AMR][1000 genomes]
rs7801053	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7804472	0.93[AFR][1000 genomes]
rs7811484	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427806	chr7:128179989-128428182	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv966738	chr7:128325654-128339129	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1016979	chr7:128333070-128534438	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128302400-128337200	Weak transcription	Gastric	stomach
2	chr7:128313600-128337200	Weak transcription	Right Atrium	heart
3	chr7:128320200-128337200	Weak transcription	NHLF	lung
4	chr7:128323400-128337200	Weak transcription	Left Ventricle	heart
5	chr7:128324200-128337200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:128324400-128337200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:128325600-128337000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:128326000-128337200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:128328000-128337000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:128328000-128337200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:128328000-128337200	Weak transcription	HSMMtube	muscle
12	chr7:128328000-128337200	Weak transcription	NH-A	brain
13	chr7:128328200-128337000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:128328800-128337200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:128329000-128337200	Weak transcription	HSMM	muscle
16	chr7:128329400-128337200	Weak transcription	Pancreas	Pancrea
17	chr7:128334000-128337200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:128335400-128337000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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