Variant report

Variant	rs7801053
Chromosome Location	chr7:128246639-128246640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10242806	1.00[ASW][hapmap];0.86[LWK][hapmap];0.95[YRI][hapmap]
rs12333625	0.81[AFR][1000 genomes]
rs13224613	0.83[AFR][1000 genomes]
rs13227912	0.95[EUR][1000 genomes]
rs13235219	0.81[AFR][1000 genomes]
rs35336068	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57049631	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6467181	0.86[YRI][hapmap]
rs6954329	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6961754	0.83[ASW][hapmap];0.86[MKK][hapmap];0.86[YRI][hapmap]
rs6967393	0.83[AFR][1000 genomes]
rs6976879	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs6977126	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs71578277	0.85[EUR][1000 genomes]
rs71578278	0.81[EUR][1000 genomes]
rs71578283	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71578287	0.87[EUR][1000 genomes]
rs7787154	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7804472	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs7810047	1.00[ASW][hapmap];0.90[YRI][hapmap]
rs7811484	1.00[AMR][1000 genomes]
rs9768808	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1848097	chr7:128179503-128248497	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv427806	chr7:128179989-128428182	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv1810084	chr7:128201902-128248697	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1829966	chr7:128201902-128248697	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1847512	chr7:128201902-128248697	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv966885	chr7:128212815-128256300	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128200000-128258800	Weak transcription	Right Ventricle	heart
2	chr7:128204800-128258800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:128219400-128249200	Weak transcription	Fetal Heart	heart
4	chr7:128220800-128249200	Weak transcription	A549	lung
5	chr7:128223800-128258800	Weak transcription	Lung	lung
6	chr7:128226400-128258800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:128230000-128249200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:128233200-128258800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:128233200-128258800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:128233400-128249200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:128233400-128249200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:128233400-128249200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:128233400-128249200	Weak transcription	Fetal Kidney	kidney
14	chr7:128233400-128249200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:128233400-128249200	Weak transcription	HUVEC	blood vessel
16	chr7:128233400-128249200	Weak transcription	NH-A	brain
17	chr7:128233400-128249200	Weak transcription	NHLF	lung
18	chr7:128233400-128258400	Weak transcription	Thymus	Thymus
19	chr7:128233400-128258600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:128233400-128258800	Weak transcription	Aorta	Aorta
21	chr7:128233400-128258800	Weak transcription	Esophagus	oesophagus
22	chr7:128233400-128258800	Weak transcription	Spleen	Spleen
23	chr7:128233400-128259000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:128233400-128259000	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:128233400-128259600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:128233400-128272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:128233600-128249200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:128233600-128249200	Weak transcription	GM12878-XiMat	blood
29	chr7:128233600-128258800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:128233800-128257600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:128233800-128258800	Weak transcription	Fetal Brain Female	brain
32	chr7:128234400-128249200	Weak transcription	HSMM	muscle
33	chr7:128234400-128249400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:128234600-128249200	Weak transcription	Hela-S3	cervix
35	chr7:128234600-128257600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:128234600-128258800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:128234600-128258800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:128234600-128258800	Weak transcription	Gastric	stomach
39	chr7:128234600-128271200	Weak transcription	Fetal Lung	lung
40	chr7:128235000-128253800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr7:128235200-128249200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr7:128235400-128249200	Weak transcription	Osteobl	bone
43	chr7:128235600-128249200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:128235600-128258800	Weak transcription	Pancreas	Pancrea
45	chr7:128235800-128250200	Weak transcription	Left Ventricle	heart
46	chr7:128236000-128251000	Weak transcription	Placenta	Placenta
47	chr7:128237000-128249200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:128237000-128249200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:128237600-128249200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:128237600-128256600	Weak transcription	Fetal Muscle Leg	muscle

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