Variant report

Variant	rs6956539
Chromosome Location	chr7:13960705-13960706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17167627	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17167628	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17167657	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17167660	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454571	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62454572	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62454579	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973055	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6974152	0.85[CEU][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777533	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7781901	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020310	chr7:13839681-14015794	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538738	chr7:13839681-14015794	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1020543	chr7:13851470-14021121	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv606277	chr7:13907827-13967377	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv887700	chr7:13948517-14042702	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv887701	chr7:13955324-13988170	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13930800-13971000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:13933800-13983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:13934200-13968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:13945600-13974400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:13946200-13969200	Weak transcription	Liver	Liver
6	chr7:13949000-13969000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:13949200-13969000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:13949200-13969200	Weak transcription	Left Ventricle	heart
9	chr7:13949400-13962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:13958600-13960800	Enhancers	Hela-S3	cervix
11	chr7:13958600-13961400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:13959000-13961400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:13959400-13961200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:13959600-13960800	Enhancers	Fetal Heart	heart
15	chr7:13959600-13960800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr7:13959600-13961200	Enhancers	Fetal Intestine Large	intestine
17	chr7:13959600-13961400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr7:13959800-13961200	Enhancers	Fetal Intestine Small	intestine
19	chr7:13960000-13961000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:13960000-13961200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:13960200-13961400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:13960200-13962000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:13960200-13963400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:13960200-13971200	Weak transcription	Pancreas	Pancrea
25	chr7:13960200-13973000	Weak transcription	Aorta	Aorta
26	chr7:13960200-13983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:13960200-13987400	Weak transcription	K562	blood
28	chr7:13960200-13988200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:13960400-13960800	Enhancers	NH-A	brain
30	chr7:13960400-13961000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:13960400-13961000	Enhancers	Fetal Lung	lung
32	chr7:13960400-13961000	Enhancers	HMEC	breast
33	chr7:13960400-13961000	Enhancers	Osteobl	bone
34	chr7:13960400-13961200	Enhancers	HUVEC	blood vessel
35	chr7:13960400-13961400	Enhancers	NHDF-Ad	bronchial
36	chr7:13960400-13964600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:13960400-13967200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:13960400-13967200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr7:13960400-13969000	Weak transcription	Fetal Muscle Leg	muscle
40	chr7:13960400-13969200	Weak transcription	Fetal Stomach	stomach
41	chr7:13960400-13969200	Weak transcription	Right Ventricle	heart
42	chr7:13960400-13971200	Weak transcription	Fetal Brain Female	brain
43	chr7:13960400-13985200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:13960400-13989000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:13960600-13961200	Enhancers	NHLF	lung
46	chr7:13960600-13961400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr7:13960600-13961600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:13960600-13964400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:13960600-13966200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:13960600-13971000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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