Variant report

Variant	rs6957837
Chromosome Location	chr7:116909828-116909829
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr7:116909122-116910570	SK-N-SH	brain:	n/a	chr7:116910019-116910036 chr7:116910020-116910036
2	GATA3	chr7:116909311-116910456	A549	lung:	n/a	chr7:116910219-116910229 chr7:116910219-116910226
3	STAT3	chr7:116909138-116910903	MCF10A-Er-Src	breast:	n/a	chr7:116909214-116909221
4	FOSL2	chr7:116909333-116910366	SK-N-SH	brain:	n/a	chr7:116910072-116910084
5	EP300	chr7:116909463-116910311	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr7:116909284-116909988	HUVEC	blood vessel:	n/a	n/a
7	JUND	chr7:116909073-116910461	SK-N-SH	brain:	n/a	chr7:116910072-116910084
8	GATA2	chr7:116909485-116910538	HUVEC	blood vessel:	n/a	chr7:116910219-116910229 chr7:116910219-116910226
9	FOS	chr7:116909340-116910347	MCF10A-Er-Src	breast:	n/a	chr7:116909632-116909643 chr7:116910072-116910084
10	FOS	chr7:116909423-116910302	MCF10A-Er-Src	breast:	n/a	chr7:116909632-116909643 chr7:116910072-116910084
11	MEF2A	chr7:116909334-116910775	SK-N-SH	brain:	n/a	n/a
12	GATA3	chr7:116909199-116911070	SK-N-SH	brain:	n/a	chr7:116910863-116910870 chr7:116910863-116910870 chr7:116910219-116910229 chr7:116910863-116910870 chr7:116910219-116910226
13	MAX	chr7:116909296-116909922	SK-N-SH	brain:	n/a	n/a
14	E2F4	chr7:116909455-116910195	MCF10A-Er-Src	breast:	n/a	n/a
15	MAFK	chr7:116909399-116910334	IMR90	lung:	n/a	n/a
16	POLR2A	chr7:116909364-116910269	SK-N-SH	brain:	n/a	n/a
17	CEBPB	chr7:116909482-116910291	Hela-S3	cervix:	n/a	n/a
18	JUND	chr7:116909170-116911121	SK-N-SH	brain:	n/a	chr7:116910072-116910084
19	FOS	chr7:116909342-116910892	MCF10A-Er-Src	breast:	n/a	chr7:116909632-116909643 chr7:116910072-116910084
20	TCF12	chr7:116909210-116910947	SK-N-SH	brain:	n/a	n/a
21	MEF2A	chr7:116909319-116910544	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr7:116909367-116909914	U87	brain:	n/a	n/a
23	TEAD4	chr7:116909355-116910431	SK-N-SH	brain:	n/a	n/a
24	MAX	chr7:116909307-116909853	A549	lung:	n/a	n/a
25	JUND	chr7:116909455-116910295	Hela-S3	cervix:	n/a	chr7:116910072-116910084
26	GTF3C2	chr7:116909590-116910591	Hela-S3	cervix:	n/a	n/a
27	EP300	chr7:116909250-116910794	SK-N-SH	brain:	n/a	n/a
28	TEAD4	chr7:116909280-116910223	SK-N-SH	brain:	n/a	n/a
29	FOSL2	chr7:116909216-116910756	SK-N-SH	brain:	n/a	chr7:116910072-116910084
30	PBX3	chr7:116909353-116910297	SK-N-SH	brain:	n/a	n/a
31	FOSL2	chr7:116909480-116909844	A549	lung:	n/a	n/a
32	EP300	chr7:116909390-116909896	SK-N-SH_RA	brain:	n/a	n/a
33	JUND	chr7:116909206-116910317	SK-N-SH	brain:	n/a	chr7:116910072-116910084
34	JUND	chr7:116909434-116909837	HCT-116	colon:	n/a	n/a
35	STAT3	chr7:116909425-116910057	MCF10A-Er-Src	breast:	n/a	n/a
36	KAP1	chr7:116909786-116909893	K562	blood:	n/a	n/a
37	RCOR1	chr7:116909411-116910285	Hela-S3	cervix:	n/a	n/a
38	STAT3	chr7:116909324-116910923	MCF10A-Er-Src	breast:	n/a	n/a
39	TAF1	chr7:116909463-116909832	SK-N-SH	brain:	n/a	n/a
40	TCF12	chr7:116909247-116910818	SK-N-SH	brain:	n/a	n/a
41	FOS	chr7:116909253-116910260	HUVEC	blood vessel:	n/a	chr7:116909632-116909643 chr7:116910072-116910084
42	MAX	chr7:116909293-116909933	A549	lung:	n/a	n/a
43	JUN	chr7:116909345-116910277	Hela-S3	cervix:	n/a	chr7:116910072-116910084
44	PBX3	chr7:116909255-116910859	SK-N-SH	brain:	n/a	n/a
45	RAD21	chr7:116909457-116910602	IMR90	lung:	n/a	n/a
46	FOSL2	chr7:116909236-116910387	A549	lung:	n/a	chr7:116910072-116910084
47	RFX5	chr7:116909419-116910255	Hela-S3	cervix:	n/a	n/a
48	JUN	chr7:116909460-116909880	HUVEC	blood vessel:	n/a	n/a
49	STAT3	chr7:116909282-116910371	MCF10A-Er-Src	breast:	n/a	n/a
50	FOSL1	chr7:116909447-116910010	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:116899094..116902058-chr7:116908237..116910049,2	MCF-7	breast:
2	7:115890993-115892266..7:116894301-116914960	GM12878	blood:
3	7:116754962-116765597..7:116894301-116914960	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000230785	TF binding region
ENSG00000135269	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12533663	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12535380	1.00[YRI][hapmap]
rs12536184	1.00[CHB][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536291	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16870066	1.00[YRI][hapmap]
rs17139519	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17139525	1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17139590	1.00[CHB][hapmap]
rs35305572	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6948009	1.00[ASN][1000 genomes]
rs71564591	1.00[ASN][1000 genomes]
rs7785752	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909000-116911000	Enhancers	HMEC	breast
2	chr7:116909200-116910000	Flanking Active TSS	NH-A	brain
3	chr7:116909200-116910800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:116909200-116910800	Enhancers	HUVEC	blood vessel
5	chr7:116909200-116911000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:116909200-116911200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:116909200-116911200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:116909200-116912000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:116909400-116910200	Flanking Active TSS	A549	lung
10	chr7:116909400-116910400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:116909400-116910800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:116909600-116910000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:116909600-116910000	Flanking Active TSS	Hela-S3	cervix
14	chr7:116909600-116910000	Active TSS	HSMM	muscle
15	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:116909800-116910000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:116909800-116910000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr7:116909800-116910000	Flanking Active TSS	HSMMtube	muscle
19	chr7:116909800-116910000	Flanking Active TSS	NHDF-Ad	bronchial
20	chr7:116909800-116910000	Flanking Active TSS	NHLF	lung
21	chr7:116909800-116910000	Flanking Active TSS	Osteobl	bone
22	chr7:116909800-116910600	Flanking Active TSS	NHEK	skin

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