Variant report

Variant	rs6948009
Chromosome Location	chr7:116916413-116916414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11973869	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12533663	1.00[ASN][1000 genomes]
rs12536184	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12536291	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13226446	0.91[EUR][1000 genomes]
rs17139519	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17139525	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34109572	1.00[EUR][1000 genomes]
rs34223626	1.00[EUR][1000 genomes]
rs34422456	1.00[EUR][1000 genomes]
rs34507244	1.00[EUR][1000 genomes]
rs34678814	0.91[EUR][1000 genomes]
rs35131627	1.00[EUR][1000 genomes]
rs35284736	0.91[EUR][1000 genomes]
rs35305572	1.00[ASN][1000 genomes]
rs35879668	1.00[EUR][1000 genomes]
rs35880748	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4256537	1.00[EUR][1000 genomes]
rs6957837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71564590	0.91[EUR][1000 genomes]
rs71564591	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785752	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:116914600-116918000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:116914600-116918200	Weak transcription	Placenta	Placenta
4	chr7:116915000-116919600	Strong transcription	Fetal Lung	lung
5	chr7:116915400-116917400	Weak transcription	NHDF-Ad	bronchial
6	chr7:116915400-116918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:116915400-116920000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:116915400-116920000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:116915400-116920000	Weak transcription	NHLF	lung
10	chr7:116915600-116917400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:116915800-116920000	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links