Variant report

Variant	rs34109572
Chromosome Location	chr7:116911754-116911755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11973869	0.98[EUR][1000 genomes]
rs13226446	0.91[EUR][1000 genomes]
rs34223626	1.00[EUR][1000 genomes]
rs34422456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34507244	1.00[EUR][1000 genomes]
rs34678814	0.91[EUR][1000 genomes]
rs35131627	1.00[EUR][1000 genomes]
rs35284736	0.91[EUR][1000 genomes]
rs35879668	1.00[EUR][1000 genomes]
rs35880748	0.98[EUR][1000 genomes]
rs4256537	1.00[EUR][1000 genomes]
rs6948009	1.00[EUR][1000 genomes]
rs71564590	0.91[EUR][1000 genomes]
rs71564591	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909200-116912000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116910400-116913000	Enhancers	NHDF-Ad	bronchial
4	chr7:116910600-116912400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:116910600-116912400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:116910800-116912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:116910800-116912800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:116910800-116915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:116911000-116911800	Enhancers	Hela-S3	cervix
10	chr7:116911000-116913200	Weak transcription	HMEC	breast
11	chr7:116911000-116913600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:116911200-116912400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:116911200-116913200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:116911200-116913200	Weak transcription	NHEK	skin
15	chr7:116911200-116913600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:116911200-116915000	Weak transcription	NHLF	lung
17	chr7:116911600-116912200	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links