Variant report

Variant	rs11973869
Chromosome Location	chr7:116915783-116915784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13226446	0.88[EUR][1000 genomes]
rs34109572	0.98[EUR][1000 genomes]
rs34223626	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34422456	0.98[EUR][1000 genomes]
rs34507244	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34678814	0.88[EUR][1000 genomes]
rs35131627	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35284736	0.88[EUR][1000 genomes]
rs35879668	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35880748	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4256537	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6948009	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71564590	0.88[EUR][1000 genomes]
rs71564591	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3351048	chr7:116915619-116915869	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:116914600-116918000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:116914600-116918200	Weak transcription	Placenta	Placenta
4	chr7:116915000-116919600	Strong transcription	Fetal Lung	lung
5	chr7:116915400-116917400	Weak transcription	NHDF-Ad	bronchial
6	chr7:116915400-116918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:116915400-116920000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:116915400-116920000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:116915400-116920000	Weak transcription	NHLF	lung
10	chr7:116915600-116917400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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