Variant report

Variant	rs34422456
Chromosome Location	chr7:116910447-116910448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115890993-115892266..7:116894301-116914960	GM12878	blood:
2	7:116754962-116765597..7:116894301-116914960	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11973869	0.98[EUR][1000 genomes]
rs13226446	0.91[EUR][1000 genomes]
rs34109572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34223626	1.00[EUR][1000 genomes]
rs34507244	1.00[EUR][1000 genomes]
rs34678814	0.91[EUR][1000 genomes]
rs35131627	1.00[EUR][1000 genomes]
rs35284736	0.91[EUR][1000 genomes]
rs35879668	1.00[EUR][1000 genomes]
rs35880748	0.98[EUR][1000 genomes]
rs4256537	1.00[EUR][1000 genomes]
rs6948009	1.00[EUR][1000 genomes]
rs71564590	0.91[EUR][1000 genomes]
rs71564591	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909000-116911000	Enhancers	HMEC	breast
2	chr7:116909200-116910800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:116909200-116910800	Enhancers	HUVEC	blood vessel
4	chr7:116909200-116911000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:116909200-116911200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:116909200-116911200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:116909200-116912000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:116909400-116910800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:116909800-116910600	Flanking Active TSS	NHEK	skin
11	chr7:116910000-116910600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:116910000-116910800	Enhancers	HSMM	muscle
13	chr7:116910000-116910800	Enhancers	HSMMtube	muscle
14	chr7:116910000-116911000	Enhancers	NH-A	brain
15	chr7:116910000-116911200	Enhancers	Osteobl	bone
16	chr7:116910200-116910600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:116910200-116910600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr7:116910200-116910600	Enhancers	A549	lung
19	chr7:116910400-116910600	Flanking Active TSS	Hela-S3	cervix
20	chr7:116910400-116910800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:116910400-116910800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:116910400-116911200	Enhancers	NHLF	lung
23	chr7:116910400-116913000	Enhancers	NHDF-Ad	bronchial

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