Variant report

Variant	rs35880748
Chromosome Location	chr7:116913790-116913791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11973869	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13226446	0.88[EUR][1000 genomes]
rs34109572	0.98[EUR][1000 genomes]
rs34223626	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34422456	0.98[EUR][1000 genomes]
rs34507244	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34678814	0.88[EUR][1000 genomes]
rs35131627	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35284736	0.88[EUR][1000 genomes]
rs35879668	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4256537	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6948009	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71564590	0.88[EUR][1000 genomes]
rs71564591	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:116910800-116915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:116911200-116915000	Weak transcription	NHLF	lung
4	chr7:116912000-116915000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:116912200-116915200	Weak transcription	Osteobl	bone
6	chr7:116912400-116914800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:116913000-116915000	Weak transcription	NHDF-Ad	bronchial
8	chr7:116913200-116913800	Enhancers	NHEK	skin
9	chr7:116913200-116915200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:116913200-116915200	Enhancers	HMEC	breast
11	chr7:116913400-116913800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:116913400-116914400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:116913600-116913800	Enhancers	Fetal Lung	lung
14	chr7:116913600-116914000	Weak transcription	Fetal Kidney	kidney
15	chr7:116913600-116915200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:116913600-116915400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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