Variant report

Variant	rs13226446
Chromosome Location	chr7:116888161-116888162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11973869	0.88[EUR][1000 genomes]
rs34109572	0.91[EUR][1000 genomes]
rs34223626	0.91[EUR][1000 genomes]
rs34422456	0.91[EUR][1000 genomes]
rs34507244	0.91[EUR][1000 genomes]
rs34678814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35131627	0.91[EUR][1000 genomes]
rs35284736	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35879668	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35880748	0.88[EUR][1000 genomes]
rs4256537	0.91[EUR][1000 genomes]
rs6948009	0.91[EUR][1000 genomes]
rs71564590	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71564591	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv516761	chr7:116888161-116892846	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116887000-116888200	Enhancers	GM12878-XiMat	blood
2	chr7:116887400-116889200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:116887600-116889200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:116888000-116890200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:116888000-116892400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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