Variant report

Variant	rs71564590
Chromosome Location	chr7:116898348-116898349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11973869	0.88[EUR][1000 genomes]
rs13226446	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34109572	0.91[EUR][1000 genomes]
rs34223626	0.91[EUR][1000 genomes]
rs34422456	0.91[EUR][1000 genomes]
rs34507244	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34678814	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35131627	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35284736	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35879668	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35880748	0.88[EUR][1000 genomes]
rs4256537	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6948009	0.91[EUR][1000 genomes]
rs71564591	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116892600-116899000	Weak transcription	NHDF-Ad	bronchial
2	chr7:116892800-116898800	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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