Variant report

Variant	rs6959104
Chromosome Location	chr7:98479167-98479168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57715526	0.86[AFR][1000 genomes]
rs58148575	0.86[AFR][1000 genomes]
rs60391457	0.86[AFR][1000 genomes]
rs6963893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395107	0.86[AFR][1000 genomes]
rs73395140	0.81[AFR][1000 genomes]
rs7807059	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477400-98479800	Weak transcription	Aorta	Aorta
2	chr7:98477400-98480400	Weak transcription	Ovary	ovary
3	chr7:98477800-98479200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:98477800-98479200	Weak transcription	NH-A	brain
5	chr7:98477800-98479200	Weak transcription	NHDF-Ad	bronchial
6	chr7:98477800-98479800	Weak transcription	Psoas Muscle	Psoas
7	chr7:98477800-98479800	Weak transcription	Right Ventricle	heart
8	chr7:98477800-98480000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:98477800-98480400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:98477800-98481200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:98477800-98481400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:98477800-98482000	Weak transcription	Esophagus	oesophagus
13	chr7:98477800-98484600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:98477800-98484600	Weak transcription	Stomach Mucosa	stomach
15	chr7:98477800-98488000	Weak transcription	Small Intestine	intestine
16	chr7:98477800-98490600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
18	chr7:98478000-98479200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:98478000-98479200	Weak transcription	HMEC	breast
20	chr7:98478000-98479200	Weak transcription	HSMMtube	muscle
21	chr7:98478000-98479400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:98478000-98479400	Weak transcription	Brain Substantia Nigra	brain
23	chr7:98478000-98479800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:98478000-98482000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:98478000-98483600	Strong transcription	K562	blood
26	chr7:98478000-98497200	Weak transcription	Fetal Heart	heart
27	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:98478200-98479200	Weak transcription	Primary B cells from cord blood	blood
29	chr7:98478200-98479200	Weak transcription	Fetal Kidney	kidney
30	chr7:98478200-98479200	Weak transcription	Pancreas	Pancrea
31	chr7:98478200-98479400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:98478200-98479400	Weak transcription	Brain Angular Gyrus	brain
33	chr7:98478200-98479600	Genic enhancers	Dnd41	blood
34	chr7:98478200-98480200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:98478200-98480400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:98478200-98483000	Strong transcription	NHLF	lung
37	chr7:98478200-98484600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:98478200-98485200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:98478200-98488000	Weak transcription	Colonic Mucosa	Colon
40	chr7:98478200-98488000	Weak transcription	Fetal Brain Male	brain
41	chr7:98478200-98504200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:98478200-98511000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:98478200-98511400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:98478200-98536200	Strong transcription	Fetal Intestine Small	intestine
45	chr7:98478200-98583200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:98478400-98479600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
48	chr7:98478400-98479600	Genic enhancers	GM12878-XiMat	blood
49	chr7:98478400-98480200	Strong transcription	Hela-S3	cervix
50	chr7:98478400-98480800	Strong transcription	Fetal Lung	lung

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