Variant report

Variant	rs6963893
Chromosome Location	chr7:98479707-98479708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57715526	0.90[AFR][1000 genomes]
rs58148575	0.90[AFR][1000 genomes]
rs58713239	0.81[AFR][1000 genomes]
rs60391457	0.90[AFR][1000 genomes]
rs6959104	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395107	0.90[AFR][1000 genomes]
rs73395140	0.86[AFR][1000 genomes]
rs73397292	0.81[AFR][1000 genomes]
rs7807059	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477400-98479800	Weak transcription	Aorta	Aorta
2	chr7:98477400-98480400	Weak transcription	Ovary	ovary
3	chr7:98477800-98479800	Weak transcription	Psoas Muscle	Psoas
4	chr7:98477800-98479800	Weak transcription	Right Ventricle	heart
5	chr7:98477800-98480000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:98477800-98480400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:98477800-98481200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:98477800-98481400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:98477800-98482000	Weak transcription	Esophagus	oesophagus
10	chr7:98477800-98484600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:98477800-98484600	Weak transcription	Stomach Mucosa	stomach
12	chr7:98477800-98488000	Weak transcription	Small Intestine	intestine
13	chr7:98477800-98490600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
15	chr7:98478000-98479800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:98478000-98482000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:98478000-98483600	Strong transcription	K562	blood
18	chr7:98478000-98497200	Weak transcription	Fetal Heart	heart
19	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:98478200-98480200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:98478200-98480400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:98478200-98483000	Strong transcription	NHLF	lung
23	chr7:98478200-98484600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:98478200-98485200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:98478200-98488000	Weak transcription	Colonic Mucosa	Colon
26	chr7:98478200-98488000	Weak transcription	Fetal Brain Male	brain
27	chr7:98478200-98504200	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:98478200-98511000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:98478200-98511400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:98478200-98536200	Strong transcription	Fetal Intestine Small	intestine
31	chr7:98478200-98583200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:98478400-98480200	Strong transcription	Hela-S3	cervix
34	chr7:98478400-98480800	Strong transcription	Fetal Lung	lung
35	chr7:98478400-98483000	Weak transcription	Colon Smooth Muscle	Colon
36	chr7:98478400-98488000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:98478400-98503600	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:98478400-98526800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr7:98478600-98479800	Strong transcription	Pancreatic Islets	Pancreatic Islet
40	chr7:98478600-98479800	Genic enhancers	NHEK	skin
41	chr7:98478600-98480600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr7:98478600-98481600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:98478600-98482400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr7:98478600-98482400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr7:98478600-98482600	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr7:98478600-98482600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:98478600-98482600	Strong transcription	A549	lung
48	chr7:98478600-98482800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:98478600-98483000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:98478600-98483200	Strong transcription	Adipose Nuclei	Adipose

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