Variant report

Variant	rs6960091
Chromosome Location	chr7:27086926-27086927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
NHP2P2	TF binding region
ENSG00000233429	Chromatin interaction
ENSG00000106006	Chromatin interaction
ENSG00000105997	Chromatin interaction
ENSG00000273433	Chromatin interaction
ENSG00000254369	Chromatin interaction
ENSG00000106004	Chromatin interaction
ENSG00000272801	Chromatin interaction
ENSG00000105991	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10235680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10249383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10271306	1.00[JPT][hapmap]
rs11564058	0.82[ASN][1000 genomes]
rs1391805	1.00[CHB][hapmap]
rs17323962	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17465316	1.00[CHB][hapmap]
rs213524	1.00[CHB][hapmap]
rs3807593	1.00[CHB][hapmap]
rs586947	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv887856	chr7:27073731-27297791	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27086000-27087400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:27086200-27087200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:27086200-27087200	Enhancers	NHEK	skin
4	chr7:27086200-27087400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:27086200-27087400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:27086200-27087400	Enhancers	Hela-S3	cervix
7	chr7:27086200-27088200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:27086400-27087000	Flanking Active TSS	HUVEC	blood vessel
9	chr7:27086600-27087000	Active TSS	HMEC	breast
10	chr7:27086600-27087000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr7:27086600-27087000	Flanking Active TSS	Osteobl	bone
12	chr7:27086600-27087600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:27086800-27092800	Weak transcription	A549	lung
14	chr7:27086800-27092800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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