Variant report

Variant	rs213524
Chromosome Location	chr7:26899780-26899781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:26897524..26906359-chr7:27169396..27177834,18	MCF-7	breast:
2	chr7:26897800..26900077-chr7:26902564..26904395,2	MCF-7	breast:
3	chr7:26898807..26900434-chr7:27171032..27173228,2	MCF-7	breast:
4	chr7:26899720..26900649-chr7:27175363..27176615,9	MCF-7	breast:
5	chr7:26898402..26900305-chr7:26902802..26904854,2	MCF-7	breast:
6	chr7:26899731..26901064-chr7:27183014..27183872,3	MCF-7	breast:
7	chr7:26894872..26897680-chr7:26898769..26901003,2	K562	blood:
8	chr7:26897760..26899796-chr7:26902533..26905235,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254369	Chromatin interaction
ENSG00000005020	Chromatin interaction
ENSG00000106004	Chromatin interaction
ENSG00000197576	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10231272	0.81[ASN][1000 genomes]
rs10235427	0.81[ASN][1000 genomes]
rs10235680	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10249383	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10252268	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10262797	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10271306	0.81[ASN][1000 genomes]
rs10486480	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10486481	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1391805	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17323962	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs213525	0.89[AFR][1000 genomes]
rs213528	0.81[AFR][1000 genomes]
rs213533	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs471536	1.00[JPT][hapmap]
rs474462	0.81[AMR][1000 genomes]
rs490366	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs501985	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs534981	1.00[JPT][hapmap]
rs550141	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs564260	1.00[JPT][hapmap]
rs567124	1.00[JPT][hapmap]
rs586947	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592359	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs622011	1.00[JPT][hapmap]
rs636371	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs673502	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs680704	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688039	1.00[JPT][hapmap]
rs6960091	1.00[CHB][hapmap]
rs73069515	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26871000-26902200	Weak transcription	Dnd41	blood
2	chr7:26886200-26903400	Weak transcription	Spleen	Spleen
3	chr7:26896400-26902600	Weak transcription	NHDF-Ad	bronchial
4	chr7:26898000-26900200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:26898000-26902600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:26898200-26901000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:26898400-26900200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:26898400-26901800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:26898600-26900200	Weak transcription	Primary B cells from cord blood	blood
10	chr7:26898600-26900400	Enhancers	HMEC	breast
11	chr7:26898600-26900800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr7:26898600-26902200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:26898600-26902200	Enhancers	NHEK	skin
14	chr7:26898600-26902600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:26898800-26899800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:26898800-26900000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:26898800-26900000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:26898800-26900000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:26898800-26900000	Weak transcription	A549	lung
20	chr7:26898800-26900000	Weak transcription	GM12878-XiMat	blood
21	chr7:26898800-26900600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:26898800-26900600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr7:26898800-26902200	Weak transcription	Adipose Nuclei	Adipose
24	chr7:26898800-26903200	Weak transcription	Colonic Mucosa	Colon
25	chr7:26898800-26903400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:26898800-26903400	Weak transcription	Psoas Muscle	Psoas
27	chr7:26898800-26903600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:26899000-26900000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:26899000-26900000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:26899000-26902600	Weak transcription	NHLF	lung
31	chr7:26899200-26902200	Weak transcription	HUVEC	blood vessel
32	chr7:26899200-26902600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:26899400-26899800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr7:26899400-26902600	Weak transcription	HepG2	liver

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