Variant report

Variant	rs10262797
Chromosome Location	chr7:26871554-26871555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10085562	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs10226612	0.87[EUR][1000 genomes]
rs10227575	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10231080	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10231272	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235427	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235680	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238067	0.95[EUR][1000 genomes]
rs10244462	0.85[CEU][hapmap]
rs10246300	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs10246483	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10246578	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10247117	1.00[EUR][1000 genomes]
rs10248232	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10249383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250097	1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10250304	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs10250321	0.95[EUR][1000 genomes]
rs10251817	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10252268	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254460	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10254467	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10257057	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs10261927	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs10262212	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs10262527	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs10265607	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs10271306	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271393	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10277060	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10280403	1.00[EUR][1000 genomes]
rs1030647	0.85[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10486473	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10486474	0.85[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs10486480	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486481	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155150	0.90[EUR][1000 genomes]
rs12333409	0.85[EUR][1000 genomes]
rs12333690	1.00[EUR][1000 genomes]
rs12334154	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1391805	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs1548482	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs17154428	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17154538	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17310268	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17310851	0.85[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs17310907	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs17313134	0.85[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17323962	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17370293	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17371905	0.85[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs213524	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2195902	0.86[EUR][1000 genomes]
rs28414527	0.85[EUR][1000 genomes]
rs28465643	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28645143	0.80[EUR][1000 genomes]
rs28781274	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34616067	0.85[EUR][1000 genomes]
rs3735547	0.85[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs3801835	1.00[JPT][hapmap]
rs4141345	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4141346	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs490366	0.85[CHD][hapmap]
rs550141	0.85[CHD][hapmap]
rs586947	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs61636979	0.85[EUR][1000 genomes]
rs67719086	1.00[EUR][1000 genomes]
rs6950668	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6954621	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs6961653	0.85[EUR][1000 genomes]
rs6961904	0.85[EUR][1000 genomes]
rs73069515	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73069545	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73079514	0.85[EUR][1000 genomes]
rs7779269	0.95[EUR][1000 genomes]
rs7781784	0.85[EUR][1000 genomes]
rs7782851	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7783807	0.85[CEU][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs7784380	0.85[CEU][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs7786308	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7786456	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7806174	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9648328	0.84[EUR][1000 genomes]
rs9648329	0.84[EUR][1000 genomes]
rs9648332	0.87[EUR][1000 genomes]
rs9648333	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv887855	chr7:26823963-26872652	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26825400-26872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:26839400-26871800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:26853400-26882600	Weak transcription	Adipose Nuclei	Adipose
4	chr7:26853600-26872000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:26854200-26876400	Weak transcription	Fetal Lung	lung
6	chr7:26856400-26871800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:26860600-26875400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:26861000-26882600	Weak transcription	HUVEC	blood vessel
9	chr7:26861200-26876600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:26862200-26877800	Weak transcription	Primary T cells from cord blood	blood
11	chr7:26862600-26872800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr7:26863200-26893200	Weak transcription	A549	lung
13	chr7:26863600-26894600	Weak transcription	Fetal Intestine Large	intestine
14	chr7:26863800-26872400	Weak transcription	Esophagus	oesophagus
15	chr7:26865800-26872000	Weak transcription	HMEC	breast
16	chr7:26866400-26871600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:26867200-26897000	Weak transcription	Lung	lung
18	chr7:26868800-26872800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr7:26869200-26889800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:26870000-26884200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:26870000-26885000	Weak transcription	GM12878-XiMat	blood
22	chr7:26870400-26894400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:26870600-26871800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:26870600-26872800	Strong transcription	Primary B cells from cord blood	blood
25	chr7:26870600-26896000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:26871000-26871600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:26871000-26902200	Weak transcription	Dnd41	blood
28	chr7:26871200-26872600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:26871400-26871600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:26871400-26872000	Weak transcription	Fetal Intestine Small	intestine
31	chr7:26871400-26872200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:26871400-26872400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:26871400-26872600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr7:26871400-26872600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr7:26871400-26872600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr7:26871400-26872800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:26871400-26873200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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