Variant report

Variant	rs9648328
Chromosome Location	chr7:26741843-26741844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10085562	0.91[EUR][1000 genomes]
rs10226612	0.96[EUR][1000 genomes]
rs10227575	0.87[EUR][1000 genomes]
rs10231080	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238067	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10246300	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10246483	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10246578	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247117	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10248232	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250097	0.87[EUR][1000 genomes]
rs10250304	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10250321	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10251817	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10252268	0.85[EUR][1000 genomes]
rs10254460	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10254467	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10257057	0.93[EUR][1000 genomes]
rs10261927	0.93[EUR][1000 genomes]
rs10262212	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10262527	0.91[EUR][1000 genomes]
rs10262797	0.84[EUR][1000 genomes]
rs10265607	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10271393	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10277060	0.87[EUR][1000 genomes]
rs10280403	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1030647	0.95[EUR][1000 genomes]
rs10486473	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486474	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486480	0.84[EUR][1000 genomes]
rs10486481	0.85[EUR][1000 genomes]
rs12155150	0.93[EUR][1000 genomes]
rs12333409	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12333690	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12334154	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1548482	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17154428	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17154538	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17310268	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17310851	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17310907	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17313134	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17323962	0.80[EUR][1000 genomes]
rs17370293	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17371905	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2195902	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28414527	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28465643	0.87[EUR][1000 genomes]
rs28645143	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28781274	0.87[EUR][1000 genomes]
rs34616067	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3735547	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4141345	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4141346	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61636979	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67719086	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6950668	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6954621	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961653	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6961904	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73069515	0.81[EUR][1000 genomes]
rs73073794	0.92[EUR][1000 genomes]
rs73079514	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7779269	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7781784	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7782851	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783807	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7784380	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7786308	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786456	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806174	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648332	0.96[EUR][1000 genomes]
rs9648333	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv5672	chr7:26711462-26757891	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26705000-26759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:26724400-26742000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:26729000-26756400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:26729200-26747000	Weak transcription	Primary B cells from cord blood	blood
5	chr7:26729200-26747000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:26729600-26750000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:26730000-26743800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:26730000-26747000	Weak transcription	Fetal Kidney	kidney
9	chr7:26731800-26743800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:26731800-26779200	Weak transcription	Spleen	Spleen
11	chr7:26732200-26744600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:26732200-26765000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:26737000-26744400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:26737000-26745200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:26738000-26744000	Weak transcription	Fetal Lung	lung
16	chr7:26740200-26743800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:26740400-26743400	Weak transcription	Adipose Nuclei	Adipose
18	chr7:26740400-26743600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:26740400-26782400	Weak transcription	Fetal Intestine Small	intestine
20	chr7:26740600-26745400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:26740800-26743600	Weak transcription	Fetal Stomach	stomach
22	chr7:26741000-26744200	Weak transcription	A549	lung
23	chr7:26741000-26745200	Weak transcription	HepG2	liver
24	chr7:26741800-26743000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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