Variant report

Variant	rs73069545
Chromosome Location	chr7:26911821-26911822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26902687..26906331-chr7:26911517..26914342,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000005020	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10085562	0.81[EUR][1000 genomes]
rs10227575	0.87[EUR][1000 genomes]
rs10231272	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10235427	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10235680	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10238067	0.85[EUR][1000 genomes]
rs10246300	0.83[EUR][1000 genomes]
rs10247117	0.88[EUR][1000 genomes]
rs10249383	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10250097	0.87[EUR][1000 genomes]
rs10250304	0.83[EUR][1000 genomes]
rs10250321	0.85[EUR][1000 genomes]
rs10252268	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10257057	0.81[EUR][1000 genomes]
rs10261927	0.81[EUR][1000 genomes]
rs10262212	0.81[EUR][1000 genomes]
rs10262527	0.83[EUR][1000 genomes]
rs10262797	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10265607	0.83[EUR][1000 genomes]
rs10271306	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10277060	0.87[EUR][1000 genomes]
rs10280403	0.88[EUR][1000 genomes]
rs10486480	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486481	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12155150	0.81[EUR][1000 genomes]
rs12333690	0.88[EUR][1000 genomes]
rs17154538	0.88[EUR][1000 genomes]
rs17154642	0.86[ASN][1000 genomes]
rs17323962	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2088587	0.86[ASN][1000 genomes]
rs28465643	0.87[EUR][1000 genomes]
rs28781274	0.87[EUR][1000 genomes]
rs67719086	0.88[EUR][1000 genomes]
rs73069515	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7779269	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links