Variant report
Variant | rs6960557 |
---|---|
Chromosome Location | chr7:146826826-146826827 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:146826412..146830203-chr7:146830446..146834436,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12703880 | 0.85[EUR][1000 genomes] |
rs12703884 | 0.91[TSI][hapmap] |
rs13237218 | 0.85[EUR][1000 genomes] |
rs13244716 | 0.88[EUR][1000 genomes] |
rs17170328 | 0.82[CEU][hapmap];0.89[EUR][1000 genomes] |
rs17170331 | 0.93[EUR][1000 genomes] |
rs17170336 | 0.82[CEU][hapmap];0.90[EUR][1000 genomes] |
rs35332063 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6945282 | 0.85[CEU][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap] |
rs71530770 | 0.89[EUR][1000 genomes] |
rs924146 | 1.00[ASW][hapmap];0.82[CEU][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034510 | chr7:146719973-146848581 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv933033 | chr7:146720301-147081560 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1033898 | chr7:146721499-147081768 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |