Variant report
| Variant | rs6960910 |
|---|---|
| Chromosome Location | chr7:21782653-21782654 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10256755 | 1.00[EUR][1000 genomes] |
| rs11975573 | 1.00[EUR][1000 genomes] |
| rs11976836 | 1.00[EUR][1000 genomes] |
| rs16872969 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17145131 | 1.00[EUR][1000 genomes] |
| rs17145187 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17145195 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17145222 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17145237 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17145350 | 1.00[AMR][1000 genomes] |
| rs17145375 | 1.00[AMR][1000 genomes] |
| rs17145504 | 1.00[AMR][1000 genomes] |
| rs28415111 | 1.00[EUR][1000 genomes] |
| rs6461601 | 1.00[AMR][1000 genomes] |
| rs73273579 | 1.00[EUR][1000 genomes] |
| rs73275610 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73275617 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73275618 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73682660 | 1.00[EUR][1000 genomes] |
| rs73682662 | 1.00[EUR][1000 genomes] |
| rs7781349 | 1.00[AMR][1000 genomes] |
| rs7806218 | 1.00[AMR][1000 genomes] |
| rs9969170 | 1.00[EUR][1000 genomes] |
| rs9969255 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016063 | chr7:21740433-21808410 | Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:21782600-21798000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
