Variant report
Variant | rs7806218 |
---|---|
Chromosome Location | chr7:21844425-21844426 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16872945 | 1.00[EUR][1000 genomes] |
rs16872969 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17145187 | 1.00[AMR][1000 genomes] |
rs17145195 | 1.00[AMR][1000 genomes] |
rs17145222 | 1.00[AMR][1000 genomes] |
rs17145237 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17145279 | 1.00[EUR][1000 genomes] |
rs17145350 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17145375 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17145504 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28758852 | 1.00[AMR][1000 genomes] |
rs6461601 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6960910 | 1.00[AMR][1000 genomes] |
rs73069956 | 0.85[AFR][1000 genomes] |
rs73275610 | 1.00[AMR][1000 genomes] |
rs73275617 | 1.00[AMR][1000 genomes] |
rs73275618 | 1.00[AMR][1000 genomes] |
rs7781349 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
2 | nsv830922 | chr7:21793386-21964675 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
3 | nsv933320 | chr7:21840543-21882825 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:21834400-21848600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |