Variant report

Variant	rs6961121
Chromosome Location	chr7:127488090-127488091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127479033..127480605-chr7:127487711..127489241,2	MCF-7	breast:
2	chr7:127444575..127446482-chr7:127486853..127488429,2	K562	blood:
3	chr7:127481994..127486437-chr7:127486807..127490045,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FSCN3-9	chr7:127487834-127488311	ucscGeneNc_uc010llg_1

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2233578	1.00[AMR][1000 genomes]
rs6467144	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73450735	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831123	chr7:127289511-127510396	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv526535	chr7:127445594-127623840	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127457000-127497800	Weak transcription	Gastric	stomach
2	chr7:127461000-127495600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:127461000-127497600	Weak transcription	Fetal Stomach	stomach
4	chr7:127469400-127488800	Weak transcription	Thymus	Thymus
5	chr7:127471800-127495600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:127474000-127495800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:127474200-127490400	Weak transcription	NHLF	lung
8	chr7:127476600-127496400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr7:127477800-127493200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:127478400-127488600	Weak transcription	A549	lung
11	chr7:127479600-127493200	Weak transcription	Fetal Lung	lung
12	chr7:127481400-127501000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr7:127481600-127489800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:127481800-127495600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:127482200-127492000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:127482600-127503200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:127483200-127490600	Strong transcription	Primary T cells from cord blood	blood
18	chr7:127483200-127491200	Strong transcription	HepG2	liver
19	chr7:127483200-127497600	Weak transcription	Small Intestine	intestine
20	chr7:127483400-127490400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:127483600-127495400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr7:127484000-127497800	Weak transcription	Lung	lung
23	chr7:127484600-127490400	Weak transcription	Right Ventricle	heart
24	chr7:127484600-127496600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr7:127484600-127497200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:127484600-127497800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:127484600-127497800	Weak transcription	NHEK	skin
28	chr7:127484600-127498000	Weak transcription	Left Ventricle	heart
29	chr7:127484600-127498800	Weak transcription	Esophagus	oesophagus
30	chr7:127484800-127494400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:127484800-127498600	Weak transcription	Colonic Mucosa	Colon
32	chr7:127485000-127489400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr7:127485000-127489800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:127485000-127490200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:127485000-127490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:127485000-127490400	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:127485000-127497800	Weak transcription	Pancreas	Pancrea
38	chr7:127485000-127512000	Weak transcription	Aorta	Aorta
39	chr7:127485200-127498000	Weak transcription	Psoas Muscle	Psoas
40	chr7:127485200-127505000	Weak transcription	HUVEC	blood vessel
41	chr7:127485200-127527800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:127485400-127489200	Weak transcription	Fetal Intestine Large	intestine
43	chr7:127485400-127492000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:127485400-127492000	Weak transcription	Fetal Intestine Small	intestine
45	chr7:127485600-127490400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:127485600-127522000	Weak transcription	Placenta	Placenta
47	chr7:127485800-127515200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:127486000-127490600	Weak transcription	Fetal Thymus	thymus
49	chr7:127486200-127488400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:127486200-127489400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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