Variant report

Variant	rs73450735
Chromosome Location	chr7:127241206-127241207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127240216..127242638-chr7:127248482..127251048,2	K562	blood:
2	chr7:127231980..127236049-chr7:127238788..127242912,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction
ENSG00000106328	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2233578	1.00[AMR][1000 genomes]
rs6467138	0.83[AMR][1000 genomes]
rs6467144	1.00[AMR][1000 genomes]
rs6961121	1.00[AMR][1000 genomes]
rs7789623	0.83[AMR][1000 genomes]
rs7807064	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127232000-127243200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:127232000-127245600	Weak transcription	Aorta	Aorta
3	chr7:127232200-127241600	Weak transcription	Adipose Nuclei	Adipose
4	chr7:127232200-127248200	Weak transcription	Spleen	Spleen
5	chr7:127233200-127244000	Weak transcription	Left Ventricle	heart
6	chr7:127233400-127243000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:127233800-127243000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:127238400-127241800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:127240600-127241400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:127240600-127241600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:127240600-127241600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:127240800-127241400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:127240800-127241600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:127240800-127241600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:127240800-127241800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:127241000-127241400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:127241000-127241400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:127241000-127241400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:127241000-127241600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr7:127241000-127241600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:127241200-127241600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links