Variant report

Variant	rs6962399
Chromosome Location	chr7:87387674-87387675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10216040	0.87[YRI][hapmap]
rs10225955	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10230766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231033	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10233247	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10235112	0.94[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs10245617	0.88[AFR][1000 genomes]
rs10249603	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10255051	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10256319	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10258021	0.84[AFR][1000 genomes]
rs10261685	0.88[YRI][hapmap]
rs10263074	0.88[YRI][hapmap]
rs10263159	1.00[AMR][1000 genomes]
rs10264991	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10266417	0.88[YRI][hapmap]
rs10275831	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10276409	0.88[AFR][1000 genomes]
rs10278483	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10280397	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs10280904	0.88[AFR][1000 genomes]
rs10281645	0.82[AFR][1000 genomes]
rs10486997	0.84[AFR][1000 genomes]
rs10487000	0.88[YRI][hapmap]
rs11973812	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs11982729	0.84[LWK][hapmap];0.88[YRI][hapmap]
rs12019344	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs12532358	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs12537294	0.84[AFR][1000 genomes]
rs13437761	0.88[AFR][1000 genomes]
rs13438341	0.88[AFR][1000 genomes]
rs17149840	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs2041049	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs2188523	0.86[AFR][1000 genomes]
rs2188530	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs28381772	0.89[LWK][hapmap];0.87[YRI][hapmap]
rs28381774	0.81[LWK][hapmap]
rs28381775	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs28452149	1.00[AMR][1000 genomes]
rs28468388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535601	0.88[AFR][1000 genomes]
rs28624877	0.88[AFR][1000 genomes]
rs28742881	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs28746492	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs28827241	1.00[AMR][1000 genomes]
rs28847692	1.00[AMR][1000 genomes]
rs28879532	0.88[AFR][1000 genomes]
rs4148730	0.85[LWK][hapmap];0.88[YRI][hapmap]
rs4148731	0.85[LWK][hapmap];0.88[YRI][hapmap]
rs6955897	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs6957599	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs7794263	0.89[LWK][hapmap];0.88[YRI][hapmap]
rs7796247	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv888695	chr7:87328502-87430669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3396303	chr7:87352350-87394627	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3425044	chr7:87356350-87394526	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87375000-87388200	Weak transcription	Liver	Liver

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