Variant report

Variant	rs6964489
Chromosome Location	chr7:15639844-15639845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55857579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296549	1.00[AMR][1000 genomes]
rs73679659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15630200-15648800	Weak transcription	Fetal Lung	lung
2	chr7:15638600-15640000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:15638600-15640200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:15639000-15640000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
5	chr7:15639400-15640000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:15639400-15640000	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr7:15639400-15640000	ZNF genes & repeats	Fetal Muscle Leg	muscle
8	chr7:15639800-15640200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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