Variant report

Variant	rs6964996
Chromosome Location	chr7:33040466-33040467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:33040375-33041243	K562	blood:	n/a	n/a
2	MYC	chr7:33040423-33040551	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
FKBP9	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6462452	1.00[AMR][1000 genomes]
rs6462457	1.00[AMR][1000 genomes]
rs6953386	1.00[AMR][1000 genomes]
rs6954660	1.00[AMR][1000 genomes]
rs72555717	1.00[AMR][1000 genomes]
rs72555741	1.00[AMR][1000 genomes]
rs7788623	1.00[AMR][1000 genomes]
rs7809021	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	esv3478254	chr7:32956181-33133477	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3478255	chr7:32956181-33133477	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3528603	chr7:32956254-33133429	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3528604	chr7:32956254-33133429	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	esv3366191	chr7:32956659-33134592	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	esv3418466	chr7:32968130-33138898	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	esv14217	chr7:32999213-33053044	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33003800-33064200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:33004400-33043800	Weak transcription	Esophagus	oesophagus
3	chr7:33011800-33042200	Weak transcription	Gastric	stomach
4	chr7:33012200-33056400	Weak transcription	Fetal Kidney	kidney
5	chr7:33012600-33077600	Weak transcription	Psoas Muscle	Psoas
6	chr7:33015200-33053200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:33016200-33043800	Weak transcription	Right Ventricle	heart
8	chr7:33017200-33042400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:33017400-33045000	Weak transcription	Liver	Liver
10	chr7:33019400-33045000	Weak transcription	A549	lung
11	chr7:33020400-33052800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:33024000-33064400	Weak transcription	Brain Angular Gyrus	brain
13	chr7:33026400-33052800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:33026800-33046200	Weak transcription	Spleen	Spleen
15	chr7:33028600-33042400	Weak transcription	Aorta	Aorta
16	chr7:33028600-33042400	Weak transcription	Lung	lung
17	chr7:33031200-33041600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:33033400-33042400	Weak transcription	Placenta	Placenta
19	chr7:33037800-33052200	Weak transcription	Fetal Brain Female	brain
20	chr7:33038000-33042400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:33038200-33052800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:33038200-33055000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr7:33038200-33080800	Weak transcription	Fetal Brain Male	brain
24	chr7:33038400-33042200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:33038400-33042400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:33038400-33042600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:33038400-33044800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:33038400-33051800	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:33038600-33042200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:33038600-33042400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:33038600-33051200	Weak transcription	HSMM	muscle
32	chr7:33038600-33051400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr7:33038600-33052000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:33038600-33053000	Weak transcription	HMEC	breast
35	chr7:33038800-33040600	Weak transcription	K562	blood
36	chr7:33038800-33041800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:33038800-33042200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr7:33038800-33042200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:33038800-33042400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:33038800-33044400	Weak transcription	HSMMtube	muscle
41	chr7:33038800-33044400	Weak transcription	Osteobl	bone
42	chr7:33038800-33048000	Weak transcription	Dnd41	blood
43	chr7:33038800-33051000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:33038800-33051200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:33038800-33051200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr7:33038800-33051800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:33038800-33051800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr7:33038800-33052800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr7:33038800-33052800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:33038800-33052800	Weak transcription	Colonic Mucosa	Colon

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