Variant report

Variant	rs7809021
Chromosome Location	chr7:33073095-33073096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:33065396..33068364-chr7:33071967..33073962,2	MCF-7	breast:
2	chr7:33071348..33074142-chr7:33076971..33078874,2	K562	blood:
3	chr7:33072810..33075175-chr7:33088773..33090510,2	K562	blood:
4	chr7:33072862..33075361-chr7:33079989..33082160,2	K562	blood:

Variant related genes	Relation type
ENSG00000122643	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6462452	1.00[AMR][1000 genomes]
rs6462457	1.00[AMR][1000 genomes]
rs6953386	1.00[AMR][1000 genomes]
rs6954660	1.00[AMR][1000 genomes]
rs6964996	1.00[AMR][1000 genomes]
rs72555717	1.00[AMR][1000 genomes]
rs72555741	1.00[AMR][1000 genomes]
rs7788623	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	esv3478254	chr7:32956181-33133477	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3478255	chr7:32956181-33133477	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3528603	chr7:32956254-33133429	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3528604	chr7:32956254-33133429	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	esv3366191	chr7:32956659-33134592	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	esv3418466	chr7:32968130-33138898	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33012600-33077600	Weak transcription	Psoas Muscle	Psoas
2	chr7:33038200-33080800	Weak transcription	Fetal Brain Male	brain
3	chr7:33042600-33083200	Weak transcription	Small Intestine	intestine
4	chr7:33052400-33078200	Weak transcription	Fetal Heart	heart
5	chr7:33053400-33073800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:33053400-33074400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:33053400-33077600	Weak transcription	Brain Substantia Nigra	brain
8	chr7:33053800-33077400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:33055200-33075800	Weak transcription	Spleen	Spleen
10	chr7:33055200-33078200	Weak transcription	NHEK	skin
11	chr7:33055200-33078400	Weak transcription	HMEC	breast
12	chr7:33055200-33083200	Weak transcription	Fetal Brain Female	brain
13	chr7:33055400-33074200	Weak transcription	NH-A	brain
14	chr7:33056200-33080400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:33056200-33083200	Weak transcription	Gastric	stomach
16	chr7:33056200-33083200	Weak transcription	Pancreas	Pancrea
17	chr7:33056800-33078800	Weak transcription	Fetal Kidney	kidney
18	chr7:33057400-33077400	Weak transcription	Brain Anterior Caudate	brain
19	chr7:33057600-33079200	Weak transcription	Placenta	Placenta
20	chr7:33057800-33078400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:33058000-33074200	Weak transcription	HUVEC	blood vessel
22	chr7:33060600-33077400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr7:33060600-33078400	Weak transcription	Ovary	ovary
24	chr7:33061000-33077200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:33061800-33073800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:33062200-33073800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:33062400-33084000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:33062800-33079200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:33064000-33073800	Weak transcription	HSMM	muscle
30	chr7:33064000-33074000	Weak transcription	HepG2	liver
31	chr7:33064000-33074000	Weak transcription	Osteobl	bone
32	chr7:33064000-33075200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:33064200-33073800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:33064200-33074000	Weak transcription	A549	lung
35	chr7:33064200-33074000	Weak transcription	NHDF-Ad	bronchial
36	chr7:33064200-33075200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:33064200-33077400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:33064200-33078000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:33064400-33074400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr7:33064400-33077200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr7:33064400-33077400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:33064600-33077200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:33065000-33077400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:33065200-33074000	Weak transcription	Hela-S3	cervix
45	chr7:33065400-33074000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:33065600-33074000	Weak transcription	Dnd41	blood
47	chr7:33065600-33077800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:33065800-33075800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:33065800-33077600	Weak transcription	Adipose Nuclei	Adipose
50	chr7:33065800-33077600	Weak transcription	Duodenum Mucosa	Duodenum

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