Variant report

Variant	rs6965150
Chromosome Location	chr7:78366113-78366114
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10243919	0.94[ASN][1000 genomes]
rs10248125	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10248911	0.88[AFR][1000 genomes]
rs10953684	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1207870	0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1207871	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1207872	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1207874	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1207875	0.85[EUR][1000 genomes]
rs1207881	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1207882	0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1859327	0.88[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs323130	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4730480	0.82[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs67890238	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7807809	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78361600-78372000	Weak transcription	Aorta	Aorta
2	chr7:78362400-78366200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:78362800-78372200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:78363800-78366400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:78364000-78366200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:78364000-78366400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:78364200-78372000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:78365800-78366200	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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