Variant report

Variant	rs1207872
Chromosome Location	chr7:78380909-78380910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10248125	0.83[CEU][hapmap]
rs10248911	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953684	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1207862	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1207868	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1207870	0.95[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207874	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207875	0.92[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207881	0.95[CEU][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207882	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207895	0.91[CEU][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1207896	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1207897	0.81[EUR][1000 genomes]
rs1207898	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs1207900	0.81[EUR][1000 genomes]
rs1207901	0.88[CEU][hapmap]
rs1209401	0.90[CEU][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12671666	0.81[EUR][1000 genomes]
rs2210115	0.91[CEU][hapmap];0.97[ASN][1000 genomes]
rs2774058	0.88[CEU][hapmap];0.97[ASN][1000 genomes]
rs67890238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951046	0.96[ASN][1000 genomes]
rs6965150	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7790151	0.88[CEU][hapmap]
rs944279	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78372400-78391600	Weak transcription	Pancreas	Pancrea
2	chr7:78372400-78395200	Weak transcription	Aorta	Aorta
3	chr7:78375800-78381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:78376000-78384600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:78377200-78381000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:78377200-78384000	Weak transcription	Psoas Muscle	Psoas
7	chr7:78377200-78385400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:78378000-78381000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:78378800-78381200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:78379000-78381000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:78379200-78382800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:78380000-78385200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:78380200-78381200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:78380400-78381000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr7:78380400-78381400	Enhancers	Brain Substantia Nigra	brain
16	chr7:78380600-78381200	Enhancers	Fetal Heart	heart
17	chr7:78380800-78381200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:78380800-78381200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr7:78380800-78381400	Enhancers	Brain Hippocampus Middle	brain
20	chr7:78380800-78381600	Enhancers	Brain Angular Gyrus	brain

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